Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M01
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46750.1 68415.m05833 FAD-binding domain-containing protein l...    35   0.045
At2g46740.1 68415.m05832 FAD-binding domain-containing protein s...    33   0.18 
At5g51930.1 68418.m06442 glucose-methanol-choline (GMC) oxidored...    27   6.8  
At4g18600.1 68417.m02755 expressed protein                             27   6.8  
At4g33760.1 68417.m04793 tRNA synthetase class II (D, K and N) f...    27   9.0  

>At2g46750.1 68415.m05833 FAD-binding domain-containing protein low
           similarity to SP|P58710 L-gulonolactone oxidase (EC
           1.1.3.8) {Mus musculus}; contains Pfam profile PF01565:
           FAD binding domain
          Length = 591

 Score = 34.7 bits (76), Expect = 0.045
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 406 RTIAVHSQSNTVPTCPNGWEELWIGYSFLMHTACADASGQSL-ISPGSCLRESVTD 570
           R    +S S T   C +G E L+I   FL HT  ADA+  ++ +  G  LR+ + +
Sbjct: 87  RVTTRYSHSITKLVCTDGTEGLFISTKFLNHTVQADATAMTMTVESGMTLRQLIVE 142


>At2g46740.1 68415.m05832 FAD-binding domain-containing protein
           strong similarity to At1g32300, At5g56490, At2g46750,
           At2g46760; contains PF01565: FAD binding domain
          Length = 590

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +1

Query: 430 SNTVP--TCPNGWEELWIGYSFLMHTACADASGQSL-ISPGSCLRESVTD 570
           S+++P  TC +G + L+I   FL HT  ADA   +L +  G  LR+ + +
Sbjct: 97  SHSIPKLTCTDGNDGLFISTKFLNHTVQADAKAMTLTVESGVTLRQLIAE 146


>At5g51930.1 68418.m06442 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 582

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 394 EAPTRTIAVHSQSNTVPTCPNGWEELWIGYSFLMHTACADASGQSLISPG 543
           E PT T   +S +  +   PN W +L+I    + +T      G S+I+ G
Sbjct: 108 ENPTATDMGNSVNTLLNNTPNSWSQLFISEDGVYNTRPRVLGGGSVINGG 157


>At4g18600.1 68417.m02755 expressed protein
          Length = 1907

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 199 LGAPGSCLRKFSTMPYMFCNLNN 267
           +G PGSCLRK+S   +    L+N
Sbjct: 153 VGGPGSCLRKYSDPTFFRKELSN 175


>At4g33760.1 68417.m04793 tRNA synthetase class II (D, K and N)
           family protein similar to SP|P36419 Aspartyl-tRNA
           synthetase (EC 6.1.1.12) (Aspartate--tRNA ligase)
           (AspRS) {Thermus thermophilus}; contains Pfam profile
           PF00152: tRNA synthetases class II (D, K and N)
          Length = 664

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 459 LGRTLDRLQLFNAHRLRRCIGTKSYISWV 545
           + +TLDRL+LF AH +     +K  I WV
Sbjct: 485 VNKTLDRLRLFVAHDMDLIDHSKHSILWV 513


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,893,752
Number of Sequences: 28952
Number of extensions: 273195
Number of successful extensions: 629
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)