Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L24
         (346 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0415 + 25038826-25038835,25039333-25039964,25040484-250405...    29   0.98 
12_02_0808 - 23347167-23347205,23347361-23347439,23348555-233487...    28   1.7  
07_03_1780 - 29465873-29466130,29466236-29466335,29466473-294665...    27   3.9  
07_03_0100 + 13389899-13390219,13390723-13390841,13391220-133913...    26   6.9  
05_03_0445 - 14099737-14100177,14100301-14100669                       26   9.1  
04_03_0240 - 13228046-13228170,13228247-13228307,13229301-132293...    26   9.1  
03_06_0604 - 35006004-35008580                                         26   9.1  

>04_04_0415 +
           25038826-25038835,25039333-25039964,25040484-25040561,
           25040588-25040833,25041598-25041684,25041860-25042024
          Length = 405

 Score = 29.1 bits (62), Expect = 0.98
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +3

Query: 117 RNESGNCVSLYDCEPLLNLFRNKSRTAEDKKLLGDSQCGYENNIPMVCCPISNACKTPDD 296
           R  +GN  S Y CE +L LFR         +++G   C     +P         C  PDD
Sbjct: 145 RELAGNGASAYLCEDVLGLFRKFHYFVRPSRIVGVGTCA----LPEAWIVGVGTCVLPDD 200


>12_02_0808 -
           23347167-23347205,23347361-23347439,23348555-23348718,
           23348838-23349056
          Length = 166

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +3

Query: 24  INSNKMIIFSTVSYILLISVNLIRAQTCTTPRNESGNCVSLYDCEPLLNLFRNKSRTAED 203
           + S + ++  T  Y+L I+ NL+   +C+     + NC  L  C P    F  K      
Sbjct: 103 MGSRRALVLGTSGYLLFIAANLV--PSCSEHALPTANC-RLPSCRPEAAAFCTKKMRHLT 159

Query: 204 KKL 212
           KK+
Sbjct: 160 KKI 162


>07_03_1780 -
           29465873-29466130,29466236-29466335,29466473-29466559,
           29466682-29467000,29467097-29468567
          Length = 744

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 114 PRNESGNCVSLYDCEPLLNLFRNKSRTAEDKKLLGDSQCGYENNIPMVCC 263
           PRNE GN ++      LL+L  +K   A   +L+  ++ G      MV C
Sbjct: 268 PRNEEGNALTTARARTLLSLLIDKKILAPRDQLIYTTKRGLITGDGMVKC 317


>07_03_0100 +
           13389899-13390219,13390723-13390841,13391220-13391315,
           13391481-13391553,13392055-13392123
          Length = 225

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 9   RELYLINSNKMIIFSTVSYILLISVNLIRAQ 101
           R LYL   + + +F+ V+YILL+S++L  +Q
Sbjct: 190 RHLYL---DSISLFAFVNYILLVSIHLSNSQ 217


>05_03_0445 - 14099737-14100177,14100301-14100669
          Length = 269

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 136 QFPDSFLGVVQVCARIKFTDINRIYETV 53
           QFP  +LG+  +  R++ TD+  I++ +
Sbjct: 29  QFPIKYLGLPLLLGRLRKTDVQPIFDKI 56


>04_03_0240 -
           13228046-13228170,13228247-13228307,13229301-13229368,
           13229979-13230051,13230130-13230231,13231473-13231592,
           13231795-13231913,13231990-13232047,13232152-13232208,
           13232719-13232851,13233534-13233591,13234592-13234601,
           13239996-13240961
          Length = 649

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 136 QFPDSFLGVVQVCARIKFTDINRIYETV 53
           QFP  +LG+  +  R++ TD+  I++ +
Sbjct: 29  QFPIKYLGLPLLLGRLRKTDVQPIFDKI 56


>03_06_0604 - 35006004-35008580
          Length = 858

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
 Frame = +3

Query: 228 CGYENNIPMVCCPISN-ACKTPDDKPGIC---VGLYNC 329
           CGY    P+  CP  N     P D  G C   + L NC
Sbjct: 291 CGYNGTSPVCRCPSENFQLSNPADPRGGCRRKIELQNC 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,220,538
Number of Sequences: 37544
Number of extensions: 142347
Number of successful extensions: 302
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)