Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L24
         (346 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)                   30   0.44 
SB_28905| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_31205| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_4318| Best HMM Match : Ligase_CoA (HMM E-Value=0)                   27   4.1  
SB_7186| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.4  
SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0)                26   7.1  
SB_21939| Best HMM Match : F-box (HMM E-Value=0.001)                   26   7.1  
SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1)                  26   9.4  
SB_8595| Best HMM Match : zf-AD (HMM E-Value=2.7)                      26   9.4  
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.4  

>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
          Length = 667

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 222 SQCGYENNIPMVCCPISNACKTPDDKPGICVGLYNC 329
           S C   + IP +C P ++AC T DD    C+G   C
Sbjct: 528 STCPVMSRIPYMCNPTTHACDTDDD----CIGGAKC 559


>SB_28905| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 175 SEIKAEQLRIRNF*ETHNVV-MRIIYLWCAVPFQTLVRLQTINREFVSV 318
           S+++A   R R +  TH ++ M +I+L+C  PF     + +   E  S+
Sbjct: 222 SQVQANTARYRKY--THTMIWMFVIFLFCYTPFMLTSAVASFGTETASI 268


>SB_31205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1528

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 261  CPISNACKTPDDKPGICVGLYNCE 332
            C   N C+ P     +C G  NCE
Sbjct: 1436 CKCGNCCEMPQQIENVCCGKRNCE 1459


>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 172 KFSK-GSQSYRDTQFPDSFLGVVQVCARIKFTDINRIYETVEKIIILLLFI 23
           +FSK G  +    Q PD  LG V   + +    INR+Y   +  ++ + F+
Sbjct: 234 EFSKNGQNTIEAVQNPDMELGSVNSLSAVDIMQINRLYNCPQARLLGVCFV 284


>SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 138  VSLYDCEPLLNLFRNKSRTAEDKKLLGDSQC 230
            + L D  P+L L+  +SRT     L GDS C
Sbjct: 1151 IKLQDDVPILGLYSPESRTHGRIALYGDSNC 1181


>SB_4318| Best HMM Match : Ligase_CoA (HMM E-Value=0)
          Length = 229

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 151 IVSLY*IYSEIKAEQLRIRNF*ETHNVVMRIIYLWCAVPFQ 273
           I  LY ++ ++ A Q+ I  F ET +   ++   W A PFQ
Sbjct: 5   IKRLYDVFLKVDATQVEINPFGETPDGKGKLFRSWKAQPFQ 45


>SB_7186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 111 TPRNESGNCVSLYDCEPLLNLFRNKSRTAEDKKLLGDSQCGYEN 242
           T     G C SL   E LL+L  ++    ED+  +  + C YEN
Sbjct: 3   TSEISKGKCTSL-KAESLLSLPNSQECGIEDENKVDRATCSYEN 45


>SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0)
          Length = 576

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +3

Query: 75  ISVNLIRAQTCTTPRNESGNCVSLYDCEPLLNLFRNKSRTAEDKKLLGDSQCGYENN 245
           IS+N  ++ +  T    SG    + D + L+  F+N  +T E + +  D +  +E N
Sbjct: 20  ISINNAKSDSKNTSNKGSGKSYQIVDTQKLIKRFKNLLQTNEIRDV--DLKSCFEEN 74


>SB_21939| Best HMM Match : F-box (HMM E-Value=0.001)
          Length = 909

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +3

Query: 60  SYILLISVNLIRAQTCTTPRNESGNCVSLYDCEPLLNLFRNKSRTAEDKKLLGDSQCGYE 239
           +Y+ L + + IR     T  NES  C S Y+ +P +N   ++S   +D  LL       E
Sbjct: 737 AYMYLYTGSPIR--NAITVHNESLPCDSAYNYQPPVNEALSQSGQDQDLPLLDSIDGRVE 794

Query: 240 NNI 248
           N++
Sbjct: 795 NSV 797


>SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1)
          Length = 630

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -1

Query: 175 NKFSKGSQSYRDTQFPDSFLGVVQVCARIKFTDINRIYETVEKIIILLLFIKYNS 11
           N F+K   SY+  +   +      V A +  + +  +Y TV + I     IK NS
Sbjct: 109 NPFTKPMPSYKSNRHDGTNSSTEIVGANMNLSSLTTVYPTVTRKIFTDQMIKQNS 163


>SB_8595| Best HMM Match : zf-AD (HMM E-Value=2.7)
          Length = 347

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 237 ENNIPMVCCPISNACKTPDDKPGICVGLYNCEH 335
           ++N   V   + N   +PD +P +C+ L  C H
Sbjct: 21  DDNSSKVMWSLINIIGSPDKEPAVCLYLRICNH 53


>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1778

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +3

Query: 96   AQTCTTPRNESGNCVSLYDCEPLLNLFRNKSRTAED-KKLLGDSQCGYENNIPMVCCPIS 272
            +QTC +  +   NC++ Y C+P+    RN+     D     GD +   E  +  +   + 
Sbjct: 1591 SQTCAS--DAKANCIADYSCKPVFITRRNEILDPRDCNDKTGDKKSQTEAELGSLLRELK 1648

Query: 273  NACKTPDD 296
                T D+
Sbjct: 1649 KPQNTSDE 1656


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,426,875
Number of Sequences: 59808
Number of extensions: 192665
Number of successful extensions: 474
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)