Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L24
         (346 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10530.1 68418.m01219 lectin protein kinase, putative similar...    26   5.9  
At3g05400.1 68416.m00590 sugar transporter, putative similar to ...    26   7.7  

>At5g10530.1 68418.m01219 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 651

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 190 EQLRIRNF*ETHNVVMRIIYLWCAVP 267
           E+LRI  F E     + I+ LWCA P
Sbjct: 567 EKLRIGGFDEKQAECLMIVGLWCAHP 592


>At3g05400.1 68416.m00590 sugar transporter, putative similar to
           sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701, integral membrane
           protein GB:U43629 from [Beta vulgaris]; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 462

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 241 IIYLWCAVPFQTLVRLQTINREFVSV 318
           I++ WC VP    + L+ I   FV+V
Sbjct: 437 IVFTWCLVPETRRLTLEEIQLSFVNV 462


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,082,554
Number of Sequences: 28952
Number of extensions: 129206
Number of successful extensions: 250
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)