Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_L23
(357 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191 73 7e-14
03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095... 71 2e-13
11_01_0223 + 1746203-1746228,1746344-1746463,1746942-1747062,174... 29 0.81
02_04_0221 - 21021886-21022144,21022227-21022345,21022681-210229... 29 1.4
01_06_1035 + 33964570-33964758,33965664-33965759,33965855-339659... 28 1.9
05_07_0144 - 28007477-28008412 28 2.5
08_01_0619 + 5412058-5413224,5413357-5413476,5413755-5413831,541... 27 3.3
10_01_0236 + 2486371-2486952 27 4.3
08_02_0386 - 16575636-16575698,16575799-16575858,16575947-165762... 27 4.3
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 27 4.3
01_06_1554 + 38217297-38217539,38217783-38218352,38218439-38219008 27 5.7
01_06_0608 + 30575897-30576142,30576252-30576755 27 5.7
07_03_0770 - 21375099-21375122,21375321-21375448,21375541-213756... 26 7.6
06_03_0880 + 25620487-25620852,25620950-25621041,25621316-256217... 26 7.6
04_04_0765 - 27910189-27912393,27912521-27912598 26 7.6
03_06_0580 - 34877496-34877723 26 7.6
02_01_0672 - 4989053-4990432,4990523-4991410,4995896-4996436,499... 26 7.6
01_06_0022 + 25675400-25676146 26 7.6
01_05_0335 + 21074117-21074241,21074299-21074929,21075359-210753... 26 7.6
>03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191
Length = 82
Score = 72.9 bits (171), Expect = 7e-14
Identities = 37/75 (49%), Positives = 48/75 (64%)
Frame = +3
Query: 21 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADSSKMYVVCGAIR 200
MQN+ G+ VDLY PRKCSA+NR+I AKDHASVQ+ I VD G + + G IR
Sbjct: 1 MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIR 59
Query: 201 RMGESDDCIVRLTKK 245
G++D + RL +K
Sbjct: 60 AQGDADSALDRLWQK 74
>03_05_0610 -
26108546-26108671,26108739-26108789,26109410-26109542,
26109633-26109682
Length = 119
Score = 71.3 bits (167), Expect = 2e-13
Identities = 36/75 (48%), Positives = 47/75 (62%)
Frame = +3
Query: 21 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADSSKMYVVCGAIR 200
MQN+ G+ VDLY PRKCS +NR+I AKDHASVQ+ I VD G + + G IR
Sbjct: 1 MQNEEGQMVDLYVPRKCSTTNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIR 59
Query: 201 RMGESDDCIVRLTKK 245
G++D + RL +K
Sbjct: 60 AQGDADSALDRLWQK 74
>11_01_0223 +
1746203-1746228,1746344-1746463,1746942-1747062,
1747441-1747572,1748266-1748375,1748465-1748648,
1749153-1749305,1749672-1749818
Length = 330
Score = 29.5 bits (63), Expect = 0.81
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 111 MRGPSHGSDDYSPSISLGSTSQRIHQRRSAFCV 13
MR P+ G D P + LG HQ+ SA C+
Sbjct: 262 MREPAGGDDVSRPMLFLGEVMSHEHQKGSASCI 294
>02_04_0221 -
21021886-21022144,21022227-21022345,21022681-21022920,
21023064-21023171,21023272-21023331,21023991-21024066,
21024155-21024360,21024722-21024784,21024925-21025012,
21025515-21026015,21027206-21027603
Length = 705
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -1
Query: 183 PRTSWRSQQHVRLQGPRPLSRAAPMRGPSHGSDDYSPS 70
PR QH L PRP+S++APM S + SPS
Sbjct: 69 PRCPGPQDQHHGLPLPRPVSKSAPMPLASPAAAPPSPS 106
>01_06_1035 +
33964570-33964758,33965664-33965759,33965855-33965923,
33966644-33966748,33966852-33966908,33967065-33967265,
33967915-33968007,33968070-33968169,33968322-33968421,
33968869-33968954,33969294-33969403
Length = 401
Score = 28.3 bits (60), Expect = 1.9
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 156 HVRLQGPRPLSRAAPMRGPSHGSDDYSPSISLGSTSQR 43
H+ Q PL+RA P H SPS+ LGS + R
Sbjct: 6 HLLSQSLYPLNRANPAAARGHLRFQASPSVRLGSGTSR 43
>05_07_0144 - 28007477-28008412
Length = 311
Score = 27.9 bits (59), Expect = 2.5
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 250 PSFL-VSLTMQSSDSPILRMAPQTTYILEESAARPVAGSTSA 128
P FL +S + S ++APQTT I ++A V STSA
Sbjct: 35 PGFLSLSPSSVSPGDAAAQLAPQTTTITTSNSAAAVGNSTSA 76
>08_01_0619 +
5412058-5413224,5413357-5413476,5413755-5413831,
5414201-5414321
Length = 494
Score = 27.5 bits (58), Expect = 3.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 210 LPSCEWLHRPRTSWRSQQHVRLQGPRPLSRAAPMRGP 100
L + E L++ SW Q+ RL+ P PL+ P + P
Sbjct: 228 LATFEGLYKEALSWFEQECQRLEPPMPLALPPPPQPP 264
>10_01_0236 + 2486371-2486952
Length = 193
Score = 27.1 bits (57), Expect = 4.3
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = -1
Query: 192 LHRPRTSWRSQQHVRL-QGPRPLSRAAPMRGP---SHGSDDYSPSISLGSTSQRIH 37
+ +PRT + R Q RPL RAAP+ P + DD ++ G +H
Sbjct: 108 IKKPRTPRSGEGQARAPQRRRPLERAAPLPPPAAVAEALDDLEREVTRGFVEDLLH 163
>08_02_0386 -
16575636-16575698,16575799-16575858,16575947-16576239,
16576361-16576517,16576601-16576948,16577047-16577177,
16577417-16577882,16578425-16579132
Length = 741
Score = 27.1 bits (57), Expect = 4.3
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = -2
Query: 170 GGVSSTSGCRVHVRYH-ELHRCVVLRMDQTIT---RRAFPWAVQVNEFTSVVL 24
GG SS+S V +H +H R ++ RRA PWA +E T VVL
Sbjct: 103 GGSSSSSTATARVPFHLPIHPPPPEREEEEEKKGIRRAVPWAAARDEETKVVL 155
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 27.1 bits (57), Expect = 4.3
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 187 QTTYILEESAARPVAGSTSAIT 122
Q T ILEE+ +P+ STSAIT
Sbjct: 510 QITNILEENVVQPLLVSTSAIT 531
>01_06_1554 + 38217297-38217539,38217783-38218352,38218439-38219008
Length = 460
Score = 26.6 bits (56), Expect = 5.7
Identities = 15/60 (25%), Positives = 24/60 (40%)
Frame = -1
Query: 207 PSCEWLHRPRTSWRSQQHVRLQGPRPLSRAAPMRGPSHGSDDYSPSISLGSTSQRIHQRR 28
P E H P+T WR H + G +S + PS S ++ + + +RR
Sbjct: 62 PKMETSHEPQTPWRLAVHPAVVGTVRVSGCGAVVAPSRRQCRVSAAVLTAAETATATRRR 121
>01_06_0608 + 30575897-30576142,30576252-30576755
Length = 249
Score = 26.6 bits (56), Expect = 5.7
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +2
Query: 41 IR*LVLPKEML---GE*SSDPCEGPRIGAARDSGRG 139
+R ++ KE L G SDPC+ RIGA D+GRG
Sbjct: 186 LRAMLAKKEELAAAGNNGSDPCKRRRIGA--DTGRG 219
>07_03_0770 -
21375099-21375122,21375321-21375448,21375541-21375672,
21377016-21377874
Length = 380
Score = 26.2 bits (55), Expect = 7.6
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 74 GE*SSDPCEGPRIGAARDSGRGP-CNRT 154
G+ SS C G +RD+ GP CNRT
Sbjct: 89 GDLSSSDCAGCGTNVSRDAVAGPTCNRT 116
>06_03_0880 +
25620487-25620852,25620950-25621041,25621316-25621789,
25622079-25623039
Length = 630
Score = 26.2 bits (55), Expect = 7.6
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -3
Query: 253 IPSFLVSLTMQSSDSPILRMAPQTTYILEESAARPVAGSTSAITSCTDAWSFAW 92
IPS L L++ + D +++ Y+ E + G I+ TD+W FAW
Sbjct: 195 IPSLLFGLSLPNPD--LIQRLGTPNYMAPEQWQPSIRGP---ISYETDSWGFAW 243
>04_04_0765 - 27910189-27912393,27912521-27912598
Length = 760
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = -1
Query: 147 LQGPRPLSRAAPMRGPSHGSDDYSPSISLGSTSQRIHQRRSAFCVSKL 4
L GP P R GP+ ++ P + LGS H +A S L
Sbjct: 296 LGGPSPPLRLVDSAGPTCDLEESPPLVPLGSPPALAHAAHAATSFSPL 343
>03_06_0580 - 34877496-34877723
Length = 75
Score = 26.2 bits (55), Expect = 7.6
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = -1
Query: 204 SCEWLHRPRTSWRSQQHVRLQGPRPLSR---AAPMRGPSHGSDD 82
S W H + + R + R G +R +A RGPSHG DD
Sbjct: 11 SGSWAHEVKQALRDKLR-RAYGTAGAARPAASAVSRGPSHGGDD 53
>02_01_0672 - 4989053-4990432,4990523-4991410,4995896-4996436,
4996532-4997168,4997266-4997320,4997439-4997675
Length = 1245
Score = 26.2 bits (55), Expect = 7.6
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = -3
Query: 259 ASIPSFLVSLTMQSSDSPILRM------APQTTYILEESAARPVAGSTSAITSCTDAWSF 98
A S L ++T SS ILR+ P+ I + A G++ ++ +CT A F
Sbjct: 860 AEAVSNLRTITAFSSQERILRLFEQSQDGPRKESIRQSWFAGLGLGTSMSLMTCTWALDF 919
Query: 97 AWIRRLLAEHFL 62
+ RL+AEH +
Sbjct: 920 WYGGRLMAEHHI 931
>01_06_0022 + 25675400-25676146
Length = 248
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 248 VFLSEPDYAVVGLSHPANGSTDHVHLGGVSSTSGC 144
+FL E + VG + ++ STD L GVS S C
Sbjct: 82 LFLEEGRTSSVGSTSSSSSSTDIAELDGVSPDSYC 116
>01_05_0335 +
21074117-21074241,21074299-21074929,21075359-21075399,
21078458-21078560,21078755-21079601,21079938-21080689,
21080712-21080970,21081011-21081354
Length = 1033
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 95 CEGPRIGAARDSGRGPCNRTCC*LLQDVRGLWSHSQDGR 211
C G I + D + P C Q VRG W H + GR
Sbjct: 90 CGGSNIVHSNDECKQPAQMWCG---QRVRGKWFHRESGR 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,110,275
Number of Sequences: 37544
Number of extensions: 185469
Number of successful extensions: 769
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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