Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L22
         (351 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812...    28   1.8  
12_01_0461 + 3618414-3618782,3619664-3619794,3620177-3620294,362...    26   7.2  
10_08_0596 + 19078153-19078440,19078802-19079068                       26   9.6  

>03_05_0070 -
           20478396-20478505,20478605-20478780,20481162-20481265,
           20481346-20481504,20481718-20481857,20482222-20482311,
           20482902-20482970,20484295-20484516,20486175-20486293,
           20486377-20486492,20488058-20488146,20488790-20488883
          Length = 495

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 334 RPLYTLCPLSXMSPFTKYNIGSLLESSADELFD 236
           RPLY   PLS  S  T  N+  +L    DEL D
Sbjct: 40  RPLYESHPLSSFSWTTTDNMDMVLHGKKDELHD 72


>12_01_0461 +
           3618414-3618782,3619664-3619794,3620177-3620294,
           3620602-3620654,3620758-3620807,3620912-3621010,
           3621511-3621620,3621773-3621900,3622071-3622161,
           3622610-3622693,3622863-3623083,3623449-3623527,
           3624134-3624283,3624326-3624470,3624604-3624983,
           3625096-3625197
          Length = 769

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 336 RDLCILYVLYHXCRLSRNIISDHC*SLLQMSCLTQMRIRWNLSH 205
           RDL + YV++         + D C  L    C++ + + WNL+H
Sbjct: 328 RDLGLFYVVFAFPEKPDPPVPDKCDRL----CVSHIEVAWNLAH 367


>10_08_0596 + 19078153-19078440,19078802-19079068
          Length = 184

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 115 NSSEFTMNLSLVALLADGATATSAIRSTAPGKHLILI 5
           +SSE     +  AL+  G  A  A+R T  G H +L+
Sbjct: 72  SSSEIPFLTNAEALIVSGIYAAYALRGTRLGDHALLL 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,430,172
Number of Sequences: 37544
Number of extensions: 106036
Number of successful extensions: 219
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)