Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L22
         (351 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38208| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.61 
SB_16058| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.5  
SB_34714| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  
SB_40498| Best HMM Match : CXCXC (HMM E-Value=4.1)                     26   9.9  
SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  

>SB_38208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 29.9 bits (64), Expect = 0.61
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 75  SATSDKFIVNSELFIVDFLIHTSDSDIVSLTMPLNLKHSN 194
           S  SD F VNS+LF VD  +   D+D+  +   L   H N
Sbjct: 301 SVDSDLFAVNSDLFAVDNDLFAVDNDLFGVDSDLFAFHLN 340



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 84  SDKFIVNSELFIVDFLIHTSDSDIVSLTMPL 176
           SD F+++S+LF VD  + + DSD+ S+   L
Sbjct: 185 SDLFVMDSDLFAVDGDLFSVDSDLFSVDSDL 215



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 84  SDKFIVNSELFIVDFLIHTSDSDIVSLTMPL 176
           SD F+++S+LF VD  + + DSD+ S+   L
Sbjct: 276 SDLFVMDSDLFAVDGDLFSVDSDLFSVDSDL 306



 Score = 27.1 bits (57), Expect = 4.3
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 75  SATSDKFIVNSELFIVDFLIHTSDSDIVSLTMPLNLKHSN 194
           +A SD F V+S+LF++D  +   DSD  ++   L +  S+
Sbjct: 28  AADSDLFAVDSDLFVMDSDLFGVDSDSFAMDSDLFVMDSD 67



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 84  SDKFIVNSELFIVDFLIHTSDSDIVSLTMPL 176
           SD F+++S+LF VD  +   DSD+ ++   L
Sbjct: 108 SDLFVMDSDLFSVDSDLFAVDSDLFAVDSDL 138



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 84  SDKFIVNSELFIVDFLIHTSDSDIVSLTMPLNLKHSN 194
           SD F V+S+LF VD  +   DSD+ ++   L +  S+
Sbjct: 157 SDLFTVDSDLFAVDNDLFAVDSDLFAVDSDLFVMDSD 193



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 84  SDKFIVNSELFIVDFLIHTSDSDIVSLTMPL 176
           SD F V+S+LF++D  +   D D+ S+   L
Sbjct: 178 SDLFAVDSDLFVMDSDLFAVDGDLFSVDSDL 208



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 75  SATSDKFIVNSELFIVDFLIHTSDSDI 155
           S  SD F V+S+LF VD  +   DSD+
Sbjct: 203 SVDSDLFSVDSDLFAVDSDLFAVDSDL 229



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 84  SDKFIVNSELFIVDFLIHTSDSDIVSLTMPLNLKHSN 194
           SD F V+S+LF VD  +   DSD+ ++   L +  S+
Sbjct: 248 SDLFTVDSDLFAVDNDLFAVDSDLFAVDSDLFVMDSD 284



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 84  SDKFIVNSELFIVDFLIHTSDSDIVSLTMPL 176
           SD F V+S+LF++D  +   D D+ S+   L
Sbjct: 269 SDLFAVDSDLFVMDSDLFAVDGDLFSVDSDL 299



 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 84  SDKFIVNSELFIVDFLIHTSDSDIVSLTMPLNLKHSN 194
           SD F ++S+LF++D  +   DSD+ ++   L +  S+
Sbjct: 52  SDSFAMDSDLFVMDSDLFGVDSDLFAVDSDLFVMDSD 88



 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 84  SDKFIVNSELFIVDFLIHTSDSDIVSLTMPL 176
           SD F V+S+LF++D  + + DSD+ ++   L
Sbjct: 101 SDLFGVDSDLFVMDSDLFSVDSDLFAVDSDL 131



 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 75  SATSDKFIVNSELFIVDFLIHTSDSDIVSL 164
           S  SD F V+S+LF VD  +   D D+ ++
Sbjct: 119 SVDSDLFAVDSDLFAVDSDLFVMDGDLFAV 148



 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 75  SATSDKFIVNSELFIVDFLIHTSDSDIVSL 164
           S  SD F V+S+LF VD  +   D D+ ++
Sbjct: 210 SVDSDLFAVDSDLFAVDSDLFVMDGDLFAV 239



 Score = 25.8 bits (54), Expect = 9.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 84  SDKFIVNSELFIVDFLIHTSDSDIVSLTMPLNLKHSN 194
           SD F V+S+LF VD  +   DSD+ ++   L   +S+
Sbjct: 66  SDLFGVDSDLFAVDSDLFVMDSDLFAVDNDLFAVYSD 102


>SB_16058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 17  VFSGRCTSDRTGCGSAVSQKRYKRQIH 97
           VF G C   RTGC   VS  R+   +H
Sbjct: 153 VFGGWCQPSRTGC---VSNARFHNDVH 176


>SB_34714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 66  SAKSATSDKFIVNSELFIVDFLIHTSDSDIVSLTMPLNLKHSN 194
           +A+    D++ +  +  I+  L+HTS    +S+T+   L+HS+
Sbjct: 20  NARLEIVDRYALTMDSKIIKSLLHTSRETDLSVTVITALRHSS 62


>SB_40498| Best HMM Match : CXCXC (HMM E-Value=4.1)
          Length = 203

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 208 TQIPTNPHLSQTAHLQKTLTVIRY 279
           + I T+PHL++ A L +TL+  RY
Sbjct: 14  SNILTDPHLNEFAGLTRTLSAKRY 37


>SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 120 VDFLIHTSDSDIVSLTMPLN 179
           + FL+H  D D + LTMPL+
Sbjct: 206 MSFLVHWPDRDQLKLTMPLS 225


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,139,955
Number of Sequences: 59808
Number of extensions: 138331
Number of successful extensions: 355
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)