Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L22
         (351 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69884-10|CAA93753.1|  400|Caenorhabditis elegans Hypothetical p...    27   2.9  
Z69883-7|CAA93745.1|  400|Caenorhabditis elegans Hypothetical pr...    27   2.9  
U13072-6|AAK31399.1|  327|Caenorhabditis elegans Hypothetical pr...    27   5.0  

>Z69884-10|CAA93753.1|  400|Caenorhabditis elegans Hypothetical
           protein C27C12.3 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -3

Query: 181 KLSGM-VRLTMSESDVCIRKSTMNSSEFTMNLSLVALLADGATAT 50
           KLSG  V +  +   + + + TMNSS+ + N +  ++L DG+ +T
Sbjct: 206 KLSGKSVNVRSNHRVLEVARETMNSSDISPNKNTSSVLLDGSPST 250


>Z69883-7|CAA93745.1|  400|Caenorhabditis elegans Hypothetical
           protein C27C12.3 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -3

Query: 181 KLSGM-VRLTMSESDVCIRKSTMNSSEFTMNLSLVALLADGATAT 50
           KLSG  V +  +   + + + TMNSS+ + N +  ++L DG+ +T
Sbjct: 206 KLSGKSVNVRSNHRVLEVARETMNSSDISPNKNTSSVLLDGSPST 250


>U13072-6|AAK31399.1|  327|Caenorhabditis elegans Hypothetical
           protein C07D10.1 protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 170 HGQTDNVRIRRVYKKINYEQFRIYYEFVACSAFG 69
           H  T+ V I  ++KK+++ Q+   Y+FV  S  G
Sbjct: 161 HCFTEFVSIGEIFKKLSHLQYLRVYDFVGSSESG 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,804,518
Number of Sequences: 27780
Number of extensions: 105703
Number of successful extensions: 221
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)