Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L22
         (351 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   0.79 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   5.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   5.6  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.4 bits (48), Expect = 0.79
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 217 PTNPHLSQTAHLQKTLT 267
           P +PH +   HL +TLT
Sbjct: 103 PLHPHTAMVTHLPQTLT 119


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 155 NVRIRRVYKKINYEQFRIYYEFVACSAFG*RRYRNQCDQKYSARKTP 15
           N R  ++ +++N E+   Y E +   A    R+R +C+ + SA   P
Sbjct: 28  NGREDQIPREMNTERLLPYVEIIEQPASKALRFRYECEGR-SAGSIP 73


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 155 NVRIRRVYKKINYEQFRIYYEFVACSAFG*RRYRNQCDQKYSARKTP 15
           N R  ++ +++N E+   Y E +   A    R+R +C+ + SA   P
Sbjct: 28  NGREDQIPREMNTERLLPYVEIIEQPASKALRFRYECEGR-SAGSIP 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,949
Number of Sequences: 438
Number of extensions: 1313
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)