Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L22
         (351 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35850.1 68417.m05092 pentatricopeptide (PPR) repeat-containi...    30   0.38 
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea...    27   2.7  
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea...    27   2.7  
At5g04620.2 68418.m00464 aminotransferase class I and II family ...    26   8.1  
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea...    26   8.1  

>At4g35850.1 68417.m05092 pentatricopeptide (PPR) repeat-containing
           protein low similarity to CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 444

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 15/44 (34%), Positives = 28/44 (63%)
 Frame = +1

Query: 199 KQMTQIPTNPHLSQTAHLQKTLTVIRYYIS*KATSMIKDIKYTK 330
           +++  IPT  +  +T  LQ+ LTV  Y+++  A + +KD+K T+
Sbjct: 235 EELYNIPTADYSHRTRFLQRNLTV--YHVAFSALADLKDVKATE 276


>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to cell cycle control protein cwf8 (SP:O14011)
           [Schizosaccharomyces pombe (Fission yeast)]
          Length = 537

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 23  SGRCTSDRTGCGSAVSQKRYKRQI 94
           S    ++ T C +A+SQKR KRQI
Sbjct: 173 SAEIITELTDCNAALSQKRKKRQI 196


>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to cell cycle control protein cwf8 (SP:O14011)
           [Schizosaccharomyces pombe (Fission yeast)]
          Length = 565

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 23  SGRCTSDRTGCGSAVSQKRYKRQI 94
           S    ++ T C +A+SQKR KRQI
Sbjct: 173 SAEIITELTDCNAALSQKRKKRQI 196


>At5g04620.2 68418.m00464 aminotransferase class I and II family
           protein similar to 8-amino-7-oxononanoate synthase,
           Bacillus sphaericus, PIR:JQ0512 [SP|P22806], Bacillus
           subtilis [SP|P53556]; contains Pfam protile PF00155
           aminotransferase, classes I and II
          Length = 476

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 14  EVFSGRCTSDRTGCGSAVSQKRYKRQIHSK 103
           EVF G C  DRT    +VS   +++ +H +
Sbjct: 51  EVFDGLCQWDRTSVEVSVSIPTFQKWLHDE 80


>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to cell cycle control protein cwf8 (SP:O14011)
           [Schizosaccharomyces pombe (Fission yeast)]
          Length = 523

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 23  SGRCTSDRTGCGSAVSQKRYKRQI 94
           S    ++ T C +A+SQ+R KRQI
Sbjct: 173 SAEVITELTDCNAALSQQRKKRQI 196


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,203,253
Number of Sequences: 28952
Number of extensions: 92117
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)