Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L21
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2...    57   1e-09
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    28   0.80 
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    27   1.1  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    27   1.8  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       27   1.8  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    25   4.3  
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    25   4.3  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   4.3  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    25   5.6  
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc...    25   5.6  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    25   7.4  

>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 25/72 (34%), Positives = 44/72 (61%)
 Frame = +3

Query: 174 LALVGTRGVGRRTLKNRLIQEYPDRFGAVIPHTCRPPRPMEENGQSYWFVSREEMERDAH 353
           + + G  GVG+ TL  RL++++ D+ G  + HT R PR  E++G  Y FV++EE ++   
Sbjct: 21  VVVFGPSGVGKSTLLKRLLKDHGDKLGFSVSHTTRTPRAGEKDGIDYHFVTKEEFQKLVA 80

Query: 354 AGRFLEYGEHNG 389
             +F+E+   +G
Sbjct: 81  EEKFVEWAVFSG 92


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 27.9 bits (59), Expect = 0.80
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -3

Query: 230 YESVLEGAPA-DAARAHKRQHTPQEGRSPRHLLVERELCPLQRHRRTRLVHELLFLLR 60
           YE+ LE A   D      +    +E     ++LVE  L  L+RHR ++    LL LLR
Sbjct: 16  YETWLEAAEKLDVIEGKYQWREQKESDEYDYVLVESRLHELRRHRLSKNTRLLLGLLR 73


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 162 LRRVLALVGTRGVGRRTLKNRLIQEYPDRFGAVIPH 269
           L+  +ALVG  G G+ TL   ++++     G+V+ H
Sbjct: 619 LKSRVALVGPNGAGKTTLIKLILEKVQPSTGSVVRH 654


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = -1

Query: 391 FPLCSPYSRKRP-ACASRSISSRDTNQYD*PFSSIGRGGRHVCGMTAPNL-SGYSCMSRF 218
           + LCSP+  KRP   A   I   DT +YD P   +  G     G   P   + Y   + +
Sbjct: 23  YVLCSPHRAKRPWQGAKEEIKKDDTVKYD-PTCYLCPGNIRATGFENPKYETTYVFPNDY 81

Query: 217 LRVRLPTP 194
             VR+  P
Sbjct: 82  PAVRVDQP 89


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 187 ARAASAGAPSRTDSYRNILIDSVLSYHT 270
           A+A S G P  TDS+ NI +  V + HT
Sbjct: 600 AQAISTGNPMGTDSFGNIGLTRVPTQHT 627


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 11/55 (20%), Positives = 20/55 (36%)
 Frame = -2

Query: 429 NSPYRVEMCPVEVSRCAPRTXXXXXXXXXXXXXXXXRTSTTDHSLPSAEADDTCV 265
           N PY  +  PV++   +  +                 ++T   S PSA +  T +
Sbjct: 96  NGPYYSQCIPVDIDPSSSSSSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTTSI 150


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 362 LPRVRGAQRETSTGHISTLYGLLLNKVK 445
           +P V G + E +TG I  L  +L+ KVK
Sbjct: 189 IPEVIGREIERATGSIFPLQNVLVRKVK 216


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 312 YWFVSREEMERDAHAGRFLEYG 377
           YWF  R+ M R    GR+L  G
Sbjct: 712 YWFGIRDRMYRSGDLGRYLPTG 733


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 323 YEPVRLTILFHRPRRTTRVWYDSTESIRIFLYE 225
           YEPVRL  + H P R T  + D  E    F+++
Sbjct: 252 YEPVRLPPIGH-PARETMPFTDDDEGKHCFVWD 283


>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 323 IPRGDGARRARGTLPRVRGAQR 388
           + RG G  R RGT  R RGA R
Sbjct: 94  VVRGRGRGRGRGTRGRGRGASR 115


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -3

Query: 413 SRCVP*RFXXXXXXXXEASRVRVALHLLAGYEPVRLTIL-FHRPRRTTRVWYD 258
           +RC+  RF        +  + +  ++L AGY+P+   +L  H       V+YD
Sbjct: 65  TRCMAIRFAVYQFLKNKTGKRKAIVNLGAGYDPLAFQLLSSHEYNTDDVVFYD 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,742,710
Number of Sequences: 5004
Number of extensions: 30567
Number of successful extensions: 102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)