BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_L21
(463 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0529 - 20067974-20068588,20069982-20070048,20070156-200702... 64 4e-11
03_02_0825 + 11565701-11565862,11565963-11566154,11567674-115677... 47 6e-06
08_02_0648 - 19694538-19696569,19697151-19697998 33 0.085
02_02_0392 - 9649858-9650405,9650499-9650670,9650788-9650926,965... 31 0.60
08_02_0650 - 19708479-19710507,19711033-19711889 29 1.4
01_07_0170 - 41670694-41671634,41672014-41672982,41673050-41673605 29 1.8
12_02_0720 - 22510996-22512949,22513752-22514533 29 2.4
11_06_0383 + 22965599-22966090 29 2.4
06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053 29 2.4
03_06_0285 + 32848085-32848988,32849057-32849245,32850136-328503... 29 2.4
12_02_0280 - 16729000-16729678,16729948-16730039,16730072-167307... 28 3.2
11_06_0594 + 25349612-25352530 28 3.2
11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195 28 3.2
01_06_1372 + 36726129-36728240 28 3.2
12_02_0722 - 22521909-22521932,22522291-22522419,22522976-225242... 28 4.2
12_02_0534 - 20103908-20105897,20106314-20107116 28 4.2
12_02_0414 + 18824347-18825161,18826018-18828229 28 4.2
11_06_0740 - 26824351-26824669,26824749-26825164 28 4.2
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 28 4.2
11_06_0754 - 26935647-26937780,26940890-26941827 27 5.6
08_01_0764 - 7332969-7333870,7334044-7334369,7334712-7335384,733... 27 5.6
07_03_0256 - 15875066-15877025,15877292-15877911 27 5.6
02_02_0076 + 6581428-6581695,6582247-6582305,6582481-6582531,658... 27 5.6
12_01_0987 - 10016203-10017165,10017346-10018180,10019532-10020379 27 7.3
12_01_0642 + 5414964-5415410,5415535-5416677 27 7.3
12_01_0625 - 5142174-5142244,5142328-5142385,5143921-5143959,514... 27 7.3
10_08_0436 - 17910948-17911583,17914699-17914929 27 7.3
03_05_0431 + 24221881-24224586 27 7.3
01_06_1655 + 38940790-38940864,38941245-38942057,38942149-389422... 27 7.3
01_03_0035 + 11838431-11838511,11838627-11839054,11839741-11841796 27 7.3
11_06_0342 - 22523610-22524332 27 9.7
10_01_0197 + 2148109-2149551 27 9.7
08_02_0464 - 17463066-17465136,17470821-17471650 27 9.7
08_02_0456 - 17362080-17364156,17364853-17364942,17372615-173733... 27 9.7
08_01_0510 + 4455805-4456637,4457837-4457912 27 9.7
05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603 27 9.7
02_02_0393 - 9711835-9712388,9712438-9712657,9713007-9713271,971... 27 9.7
01_01_0879 + 6896587-6896701,6896819-6897005,6897475-6897774,689... 27 9.7
>12_02_0529 -
20067974-20068588,20069982-20070048,20070156-20070264,
20070357-20070402,20070501-20070636,20070745-20070866,
20070944-20071306,20071914-20072043,20072129-20072202,
20072620-20072709,20072836-20072875,20073047-20073117,
20074248-20074277
Length = 630
Score = 64.5 bits (150), Expect = 4e-11
Identities = 28/75 (37%), Positives = 45/75 (60%)
Frame = +3
Query: 165 RRVLALVGTRGVGRRTLKNRLIQEYPDRFGAVIPHTCRPPRPMEENGQSYWFVSREEMER 344
++ + + G GVG+ TL +L++EYP +FG + HT R PR E +G Y F R ++E
Sbjct: 174 QKPIVISGPSGVGKGTLIAKLMKEYPSKFGFSVSHTTRAPREKEIDGVHYHFTERSKIEE 233
Query: 345 DAHAGRFLEYGEHNG 389
+ G+FLE+ +G
Sbjct: 234 EISEGKFLEFAHVHG 248
Score = 34.3 bits (75), Expect = 0.048
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +1
Query: 388 GNLYGTHLDSIRAVIKQGKMCILD 459
GN+YGT ++++ +V +GK CILD
Sbjct: 248 GNVYGTSVEAVESVTDEGKRCILD 271
>03_02_0825 +
11565701-11565862,11565963-11566154,11567674-11567718,
11568224-11568535,11569036-11569092
Length = 255
Score = 47.2 bits (107), Expect = 6e-06
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = +3
Query: 153 PPFLRRVLALVGTRGVGRRTLKNRLIQEYPDRFGAVIPHTCRPPRPMEENGQSYWFVSRE 332
PP +L + G GVG+ + RL QE + V+ T R RP E +G+ Y+FV++E
Sbjct: 32 PPPQPMILVISGPSGVGKDAVIQRL-QEEREGMHFVVTATSRAKRPGEVDGKDYYFVTKE 90
Query: 333 E----MERDAHAGRFLEYGEHNGKP 395
E +ER L YGE+ G P
Sbjct: 91 EFLTMIERKELLEYALVYGEYKGIP 115
>08_02_0648 - 19694538-19696569,19697151-19697998
Length = 959
Score = 33.5 bits (73), Expect = 0.085
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +3
Query: 165 RRVLALVGTRGVGRRTLKNRLIQEYPDRF 251
RRV+++VG+ G+G+ TL N++ Q+ RF
Sbjct: 186 RRVISIVGSGGIGKTTLANQVYQKVRSRF 214
>02_02_0392 -
9649858-9650405,9650499-9650670,9650788-9650926,
9651113-9651334,9651422-9651495,9653042-9653661,
9653810-9653965,9655250-9655347,9655443-9655534,
9655891-9655977
Length = 735
Score = 30.7 bits (66), Expect = 0.60
Identities = 19/41 (46%), Positives = 21/41 (51%)
Frame = +2
Query: 260 HTTHVSSASADGREWSVVLVRIPRGDGARRARGTLPRVRGA 382
H TH +S A GR W+V G GA ARG PR R A
Sbjct: 212 HGTHTASTIAGGRVWNV--SHHQGGLGAGVARGGAPRARVA 250
>08_02_0650 - 19708479-19710507,19711033-19711889
Length = 961
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 165 RRVLALVGTRGVGRRTLKNRLIQEYPDRF 251
RRV+++VG G+G+ TL N++ Q +F
Sbjct: 190 RRVVSIVGFGGLGKTTLANQVYQHIKSQF 218
>01_07_0170 - 41670694-41671634,41672014-41672982,41673050-41673605
Length = 821
Score = 29.1 bits (62), Expect = 1.8
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +1
Query: 166 GVCWRLWARAASAGAPSRTDSYRNILIDSVL-----SYHTRVVRLGRWKR 300
G C R W A + + S N+ ++ V S TRVV+LGRWKR
Sbjct: 182 GHCRRFWVMAKATSTNNAFLSVFNLDMEYVKIHIAKSRITRVVQLGRWKR 231
>12_02_0720 - 22510996-22512949,22513752-22514533
Length = 911
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 171 VLALVGTRGVGRRTLKNRLIQEYPDRF 251
++++VG G+G+ TL N L+QE +F
Sbjct: 181 IISIVGFGGLGKTTLANSLLQELEAKF 207
>11_06_0383 + 22965599-22966090
Length = 163
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 161 EGRSPRHLLVERELCPLQRHRRTRLV 84
E RSP+H L E PL RH+R V
Sbjct: 36 ERRSPQHGLTADEFTPLHRHKRCSCV 61
>06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053
Length = 1613
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +3
Query: 165 RRVLALVGTRGVGRRTLKNRLIQEYPDRFGAVIPHTC 275
RRVLA+VG G+G+ TL R++ E P GA H C
Sbjct: 195 RRVLAIVGFGGLGKTTLA-RMVCENPMVKGADF-HCC 229
>03_06_0285 +
32848085-32848988,32849057-32849245,32850136-32850311,
32850569-32851141
Length = 613
Score = 28.7 bits (61), Expect = 2.4
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Frame = -1
Query: 412 RDVSRRGFPLCSPYSRKRPA-----CASRSISSRDTNQYD*P--FSSIGRGGRHVC-GMT 257
R S + SPYS RPA C +++ R+ Y P SS+G G + +T
Sbjct: 526 RSPSHASYGTASPYSYDRPAAHPLYCGQNTLAMREPYAYHHPSEVSSVGLGMSYPSPPIT 585
Query: 256 APNLSGYS 233
P +GYS
Sbjct: 586 YPAYAGYS 593
>12_02_0280 -
16729000-16729678,16729948-16730039,16730072-16730772,
16731033-16731144,16731961-16731970,16732954-16733663
Length = 767
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +3
Query: 168 RVLALVGTRGVGRRTLKNRLIQEYPDRF 251
+V+++VG G+G+ TL N++ ++ D+F
Sbjct: 147 KVVSIVGFGGLGKTTLANQVYKQVKDKF 174
>11_06_0594 + 25349612-25352530
Length = 972
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 168 RVLALVGTRGVGRRTLKNRLIQEYPDR 248
R++ +VG+RG+G+ TL ++ + Y R
Sbjct: 214 RIIPIVGSRGMGKTTLAEQVYKGYSSR 240
>11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195
Length = 767
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +3
Query: 165 RRVLALVGTRGVGRRTLKNRLIQEYPDRF 251
R+++++VG G+G+ TL N++ Q+ +F
Sbjct: 199 RKIVSIVGQGGLGKTTLANQVYQKIKGQF 227
>01_06_1372 + 36726129-36728240
Length = 703
Score = 28.3 bits (60), Expect = 3.2
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = -1
Query: 382 CSPYSRKRPACASRSISSRDTNQYD*PFSSIGRG--GRHVCGMTAPNLSGYSCMSRFLRV 209
C+P R A + +R + D F+S+ G GR + APNL Y+ + R L
Sbjct: 115 CNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRI----APNLQTYNIVLRSLCA 170
Query: 208 RLPTPRVPTSASTRRRK 158
R R T + RR+
Sbjct: 171 RGDLDRAVTLFDSLRRR 187
>12_02_0722 -
22521909-22521932,22522291-22522419,22522976-22524242,
22524659-22525461
Length = 740
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 171 VLALVGTRGVGRRTLKNRLIQEYPDRF 251
++++VG G+G+ TL N L QE +F
Sbjct: 188 IISIVGFGGLGKTTLANSLFQELKAKF 214
>12_02_0534 - 20103908-20105897,20106314-20107116
Length = 930
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 171 VLALVGTRGVGRRTLKNRLIQEYPDRF 251
++++VG G+G+ TL N L QE +F
Sbjct: 188 IISIVGFGGLGKTTLANSLFQELKAKF 214
>12_02_0414 + 18824347-18825161,18826018-18828229
Length = 1008
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 168 RVLALVGTRGVGRRTLKNRL 227
RV+++VG RGVG+ TL N +
Sbjct: 180 RVISIVGFRGVGKTTLANEV 199
>11_06_0740 - 26824351-26824669,26824749-26825164
Length = 244
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 168 RVLALVGTRGVGRRTLKNRLIQEYPDRF 251
RVL++VG G+G+ TL N L ++ +F
Sbjct: 179 RVLSIVGFGGIGKTTLANELYRKIGRQF 206
>11_06_0458 +
23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/28 (35%), Positives = 22/28 (78%)
Frame = +3
Query: 168 RVLALVGTRGVGRRTLKNRLIQEYPDRF 251
+V+++VG+ G+G+ TL N++ Q+ ++F
Sbjct: 239 KVVSIVGSGGLGKSTLANQVYQKIGNQF 266
>11_06_0754 - 26935647-26937780,26940890-26941827
Length = 1023
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 168 RVLALVGTRGVGRRTLKNRLIQEYPDRF 251
RV+++VG G+G+ TL N L ++ +F
Sbjct: 235 RVVSIVGVGGIGKTTLANELYRKLRRQF 262
>08_01_0764 -
7332969-7333870,7334044-7334369,7334712-7335384,
7336195-7336219
Length = 641
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 339 ERDAHAGRFLEYGEHNGKPLRDTSRL 416
++D AG F++ G+HNG L+D L
Sbjct: 3 DQDDGAGFFMDPGKHNGMSLKDRREL 28
>07_03_0256 - 15875066-15877025,15877292-15877911
Length = 859
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 168 RVLALVGTRGVGRRTLKNRLIQEYPDRF 251
R +A+VG G+G+ TL N++ E ++F
Sbjct: 129 RTMAIVGCGGLGKTTLANQVYLEVKNQF 156
>02_02_0076 +
6581428-6581695,6582247-6582305,6582481-6582531,
6582766-6582898,6583533-6583618,6583955-6584008,
6584576-6584645,6585198-6585259,6585370-6585457,
6585645-6585728,6585820-6586028
Length = 387
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 296 REWSVVLVRIPRGDGARRARGTL 364
RE + VL R+ RGD +RRA G++
Sbjct: 43 REAAAVLRRVLRGDASRRAAGSI 65
>12_01_0987 - 10016203-10017165,10017346-10018180,10019532-10020379
Length = 881
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +3
Query: 168 RVLALVGTRGVGRRTLKNRLIQEYPDRF 251
+V+++VG G+G+ TL N++ + D+F
Sbjct: 191 KVVSIVGFGGLGKTTLANQVYNKIKDQF 218
>12_01_0642 + 5414964-5415410,5415535-5416677
Length = 529
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 263 TTHVSSASADGREWSVVLVRIPRGDGARRARGTLPRVRGAQRETST 400
T V AD ++L+ +PR DG L VR R+T+T
Sbjct: 329 TVDVGELYADEERRFLLLLDVPRADGDAAVATRLASVRCTYRDTAT 374
>12_01_0625 -
5142174-5142244,5142328-5142385,5143921-5143959,
5145730-5146710
Length = 382
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +3
Query: 168 RVLALVGTRGVGRRTLKNRLI--QEYPDRFGAVI 263
RV+A+VG G+G+ TL + Q+ ++F +I
Sbjct: 179 RVVAIVGVGGIGKTTLAQNIFNHQDIKEKFDKII 212
>10_08_0436 - 17910948-17911583,17914699-17914929
Length = 288
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -1
Query: 331 SRDTNQYD*PFSSIGRGGRHVCGMTAPNLSGYSCMSRFLRVRLPTP 194
S D +Q P+S + G R +C TA + + VR+P+P
Sbjct: 236 SYDRSQVHEPYSPLSHGFRAMCAATALGGGNSTAAASCTVVRIPSP 281
>03_05_0431 + 24221881-24224586
Length = 901
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 301 FSSIGRGGRHVCGM 260
F SIG GG HVCG+
Sbjct: 201 FQSIGAGGYHVCGV 214
>01_06_1655 +
38940790-38940864,38941245-38942057,38942149-38942268,
38942883-38943566
Length = 563
Score = 27.1 bits (57), Expect = 7.3
Identities = 21/76 (27%), Positives = 29/76 (38%)
Frame = -1
Query: 379 SPYSRKRPACASRSISSRDTNQYD*PFSSIGRGGRHVCGMTAPNLSGYSCMSRFLRVRLP 200
+P R+ A A+ ++ SR ++ + G GGRHV P S S S
Sbjct: 362 TPIERRHEAEAAAALLSRQRVEH---VGNGGGGGRHVAVTATPARSVVSSYSTATATTAA 418
Query: 199 TPRVPTSASTRRRKGG 152
PR A GG
Sbjct: 419 RPRATRPAKVASSYGG 434
>01_03_0035 + 11838431-11838511,11838627-11839054,11839741-11841796
Length = 854
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 168 RVLALVGTRGVGRRTLKNRLIQEYPDRF 251
+V+++VG+ G+G+ TL ++ E RF
Sbjct: 92 KVISIVGSAGIGKTTLAKQVYLEIKGRF 119
>11_06_0342 - 22523610-22524332
Length = 240
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 168 RVLALVGTRGVGRRTLKNRLIQEYPDRF 251
RVLA+VG G+G+ TL L +++ ++F
Sbjct: 142 RVLAVVGFGGLGKTTLALALHRKFGEKF 169
>10_01_0197 + 2148109-2149551
Length = 480
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 153 PPFLRRVLALVGTRGVGRRTL 215
PPF VL ++G VG+RTL
Sbjct: 187 PPFAPTVLPIIGPSRVGKRTL 207
>08_02_0464 - 17463066-17465136,17470821-17471650
Length = 966
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 165 RRVLALVGTRGVGRRTLKNRLIQEYPDRFG 254
R+VL++ G G+G+ TL N + ++ +FG
Sbjct: 190 RKVLSIYGFGGLGKTTLANEVRRKIGPQFG 219
>08_02_0456 -
17362080-17364156,17364853-17364942,17372615-17373318,
17373421-17373451,17374366-17374448,17374517-17374640,
17376427-17376560
Length = 1080
Score = 26.6 bits (56), Expect = 9.7
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +3
Query: 168 RVLALVGTRGVGRRTLKNRLIQEYPDRF 251
R +++VG G+G+ T+ N + +E ++F
Sbjct: 326 RTISIVGIGGLGKTTIANLIFEELREQF 353
>08_01_0510 + 4455805-4456637,4457837-4457912
Length = 302
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +3
Query: 168 RVLALVGTRGVGRRTLKNRLIQEYPDRF 251
+V+++VG G+G+ TL N++ +E +F
Sbjct: 196 KVVSIVGCGGLGKTTLANQVFKEIRHQF 223
>05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603
Length = 1132
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 168 RVLALVGTRGVGRRTLKNRLIQEYPDRF 251
+V+++VG GVG+ TL N L ++ +F
Sbjct: 200 KVVSIVGVGGVGKTTLANELYRKLGRQF 227
>02_02_0393 -
9711835-9712388,9712438-9712657,9713007-9713271,
9713409-9713476,9713587-9714209,9714307-9714462,
9714551-9714648,9714734-9714825,9714928-9715017
Length = 721
Score = 26.6 bits (56), Expect = 9.7
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +2
Query: 260 HTTHVSSASADGREWSVVLVRIPRGDGARRARGTLPRVRGAQRETSTGHISTLYG 424
H TH +S G+ W+V G A ARG PR R A + G ++ G
Sbjct: 213 HGTHTASTIVGGQVWNV--SHRQSGLAAGMARGGAPRARLAVYKACWGDSNSTCG 265
>01_01_0879 +
6896587-6896701,6896819-6897005,6897475-6897774,
6897877-6898133,6898596-6898825,6899122-6899247,
6900195-6900374,6901079-6901216,6901515-6901670,
6902409-6902699,6902923-6903162
Length = 739
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 174 LALVGTRGVGRRTLKNRLIQE 236
LA+VG VG+ TL N L+QE
Sbjct: 314 LAIVGRPNVGKSTLLNTLLQE 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,142,856
Number of Sequences: 37544
Number of extensions: 238301
Number of successful extensions: 1102
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -