Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_L21
(463 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59147| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 1e-23
SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21) 77 7e-15
SB_17677| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_44409| Best HMM Match : PDZ (HMM E-Value=7.1e-33) 65 2e-11
SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 2e-06
SB_11360| Best HMM Match : PDZ (HMM E-Value=0) 48 3e-06
SB_45036| Best HMM Match : Guanylate_kin (HMM E-Value=0) 46 1e-05
SB_33618| Best HMM Match : Guanylate_kin (HMM E-Value=6.3e-13) 33 0.11
SB_45856| Best HMM Match : DUF755 (HMM E-Value=4.7) 31 0.46
SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.81
SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_13744| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_10821| Best HMM Match : TFIIB (HMM E-Value=0.35) 27 5.7
SB_5816| Best HMM Match : RVT_1 (HMM E-Value=3e-16) 27 5.7
SB_55446| Best HMM Match : Sec7 (HMM E-Value=8.1) 27 7.6
SB_55151| Best HMM Match : Adeno_shaft (HMM E-Value=6.4) 27 7.6
SB_37419| Best HMM Match : Pox_A32 (HMM E-Value=0.24) 27 7.6
SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2) 27 7.6
SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_30078| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
SB_18995| Best HMM Match : rve (HMM E-Value=0.0012) 27 10.0
SB_14439| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
>SB_59147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 105 bits (253), Expect = 1e-23
Identities = 46/81 (56%), Positives = 60/81 (74%)
Frame = +3
Query: 147 RTPPFLRRVLALVGTRGVGRRTLKNRLIQEYPDRFGAVIPHTCRPPRPMEENGQSYWFVS 326
+ PPF R+ L ++G +GVGRRTLKN+LI RFG IPHT R R E++G+ Y+FVS
Sbjct: 354 KMPPFQRKTLVMIGAQGVGRRTLKNKLIMSDRKRFGTTIPHTSRQMREGEQSGRGYFFVS 413
Query: 327 REEMERDAHAGRFLEYGEHNG 389
REEMERD AG++LE+GE+ G
Sbjct: 414 REEMERDIRAGKYLEFGEYGG 434
Score = 40.3 bits (90), Expect = 8e-04
Identities = 14/24 (58%), Positives = 21/24 (87%)
Frame = +1
Query: 388 GNLYGTHLDSIRAVIKQGKMCILD 459
GN+YGT +D+IR V++ GKMC++D
Sbjct: 434 GNMYGTKIDTIREVMRSGKMCVVD 457
>SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21)
Length = 609
Score = 77.0 bits (181), Expect = 7e-15
Identities = 35/67 (52%), Positives = 44/67 (65%)
Frame = +3
Query: 171 VLALVGTRGVGRRTLKNRLIQEYPDRFGAVIPHTCRPPRPMEENGQSYWFVSREEMERDA 350
+L L G G G+R L RL QE+PD FG + HT RPPR EE+GQ Y+FV++EE E
Sbjct: 323 MLILCGPSGAGKRHLARRLCQEFPDFFGIGVSHTTRPPRKKEEHGQDYFFVNKEEFEHGV 382
Query: 351 HAGRFLE 371
+G FLE
Sbjct: 383 MSGLFLE 389
>SB_17677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 685
Score = 65.7 bits (153), Expect = 2e-11
Identities = 31/65 (47%), Positives = 39/65 (60%)
Frame = +3
Query: 186 GTRGVGRRTLKNRLIQEYPDRFGAVIPHTCRPPRPMEENGQSYWFVSREEMERDAHAGRF 365
G GVGR LK RL+ + + +PHT R RP E NG+ Y+FVSR ME A +F
Sbjct: 452 GPPGVGRNELKKRLLACDNELYTTAVPHTSRRMRPYEANGREYYFVSRTTMENYAQNSKF 511
Query: 366 LEYGE 380
+EYGE
Sbjct: 512 IEYGE 516
Score = 35.9 bits (79), Expect = 0.016
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +1
Query: 394 LYGTHLDSIRAVIKQGKMCIL 456
LYGT +DSI+ VI+ GKMCIL
Sbjct: 521 LYGTSVDSIKRVIRTGKMCIL 541
>SB_44409| Best HMM Match : PDZ (HMM E-Value=7.1e-33)
Length = 718
Score = 65.3 bits (152), Expect = 2e-11
Identities = 31/68 (45%), Positives = 40/68 (58%)
Frame = +3
Query: 177 ALVGTRGVGRRTLKNRLIQEYPDRFGAVIPHTCRPPRPMEENGQSYWFVSREEMERDAHA 356
++ G +GR+ L+ RLIQ PDRF IPHT RP +P E N Y FV R D A
Sbjct: 590 SVTGPPKIGRKELRQRLIQYDPDRFAGAIPHTSRPIKPGEINDHDYHFVPRHTFVTDIVA 649
Query: 357 GRFLEYGE 380
+F+E+GE
Sbjct: 650 HKFVEHGE 657
Score = 30.3 bits (65), Expect = 0.81
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 391 NLYGTHLDSIRAVIKQGKMCILD 459
+ YGT D+I+ VI GK CIL+
Sbjct: 661 HFYGTSFDAIKMVINAGKTCILN 683
>SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 622
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +3
Query: 219 NRLIQEYPDRFGAVI-PHTCRPPRPMEENGQSYWFVSREEMERDAHAGRFLEYGEHNG 389
+R + Y DR+ A T R PR EE+G+ Y+FVS E M D + R+LEYG H G
Sbjct: 439 SRKKKTYRDRYVAKHNADTTRDPRAGEEDGKHYYFVSAEVMMSDIESNRYLEYGTHEG 496
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 388 GNLYGTHLDSIRAVIKQGKMCILD 459
G +YGT LD+I +I+ K+ ILD
Sbjct: 496 GAMYGTKLDTITDIIENHKVAILD 519
>SB_11360| Best HMM Match : PDZ (HMM E-Value=0)
Length = 625
Score = 48.4 bits (110), Expect = 3e-06
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +3
Query: 213 LKNRLIQEYPDRFGAVIPHTCRPPRPMEENGQSYWFVSR 329
+ + LI E+PD+FG+ +PHT RP R E++G Y FV R
Sbjct: 469 INDDLISEFPDKFGSCVPHTTRPRRDYEKDGLDYHFVDR 507
>SB_45036| Best HMM Match : Guanylate_kin (HMM E-Value=0)
Length = 288
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/62 (40%), Positives = 34/62 (54%)
Frame = +3
Query: 195 GVGRRTLKNRLIQEYPDRFGAVIPHTCRPPRPMEENGQSYWFVSREEMERDAHAGRFLEY 374
G G+ +L L+ + ++ + HT R RP EE+G Y FVSRE + AG FLEY
Sbjct: 15 GAGKTSLVKALLAQ-DEQIRVSVSHTTRAMRPGEEDGVHYNFVSREAFDSLITAGNFLEY 73
Query: 375 GE 380
E
Sbjct: 74 AE 75
>SB_33618| Best HMM Match : Guanylate_kin (HMM E-Value=6.3e-13)
Length = 171
Score = 33.1 bits (72), Expect = 0.11
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 270 TCRPPRPMEENGQSYWFVSREEMERDAHAGRFLEYGE 380
T RP +P E N Y FV R D A +F+E+GE
Sbjct: 2 TSRPIKPGEINDHDYHFVPRHTFVTDIVAHKFVEHGE 38
Score = 30.3 bits (65), Expect = 0.81
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 391 NLYGTHLDSIRAVIKQGKMCILD 459
+ YGT D+I+ VI GK CIL+
Sbjct: 42 HFYGTSFDAIKMVINAGKTCILN 64
>SB_45856| Best HMM Match : DUF755 (HMM E-Value=4.7)
Length = 187
Score = 31.1 bits (67), Expect = 0.46
Identities = 22/91 (24%), Positives = 36/91 (39%)
Frame = -3
Query: 281 RTTRVWYDSTESIRIFLYESVLEGAPADAARAHKRQHTPQEGRSPRHLLVERELCPLQRH 102
R+TR ++ ++ R+ Y+ G R RQ + + RSP H +RE L
Sbjct: 21 RSTRDFFSGVKTGRMRPYDHQRRGCIVRNHRPRDRQQSRRTARSPPHSTTDREDGTLAER 80
Query: 101 RRTRLVHELLFLLRYPRSAYADLMHEVRFRW 9
+ +LF+ L+ FRW
Sbjct: 81 HAPQAPRSVLFIFPSRYLFAIGLVPIFSFRW 111
>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6116
Score = 30.3 bits (65), Expect = 0.81
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 157 PSCGVCWRLWARAASAGAPSRTDSYRNILIDSVLSYHTRV 276
P G + ARA +G+P + SY N+ +D++ + T V
Sbjct: 5577 PGAGQIYSFRARAKDSGSPQLSSSYVNVRVDTIDAEQTMV 5616
>SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1060
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/82 (19%), Positives = 36/82 (43%)
Frame = -3
Query: 335 LLAGYEPVRLTILFHRPRRTTRVWYDSTESIRIFLYESVLEGAPADAARAHKRQHTPQEG 156
LL GY+ V+++ILF+ + Y+ + + ++ A A +++
Sbjct: 705 LLVGYDAVKVSILFNAFHFGFALHYEGSRESAVSAFKMGKSRAEIQRAYRERKKGKDSNW 764
Query: 155 RSPRHLLVERELCPLQRHRRTR 90
+ + V++ P +HRR +
Sbjct: 765 QQNESIRVQKYYTPASKHRRLK 786
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 29.5 bits (63), Expect = 1.4
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = -3
Query: 356 RVRVALHLLAGYEPVRLTILFHRPRRTTRVWYDSTESIRIFLYESVLEGAPADAARAHKR 177
RV+ + AGY + L++ R + T S + ES+L A+ +
Sbjct: 3610 RVQASFPPSAGYREISLSVPRSRNKEETLNQQSYKFSYKTTPQESILANGSAERMEESQW 3669
Query: 176 QHTPQEGRSPRHLLVE-RELCPLQRHR 99
TP+E R PR R L RHR
Sbjct: 3670 HTTPRERRDPRRSPQSGRRSRSLPRHR 3696
>SB_13744| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -3
Query: 227 ESVLEGAPADAARAHKRQHTPQEGRSPRHL 138
++V G A +H++++TP+ GR+ R L
Sbjct: 54 QTVRRGEDEIEAESHRKENTPEHGRAKRRL 83
>SB_10821| Best HMM Match : TFIIB (HMM E-Value=0.35)
Length = 473
Score = 27.5 bits (58), Expect = 5.7
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 273 CRPPRPMEENGQSYWFVSREEMERD-AHAGRFLEYGEHNGKPLRDTSRL 416
C R ++NG + E+M+R AH G + YG G+ D SR+
Sbjct: 125 CDEKRWSQKNGVTSCLECGEQMQRVIAHEGEWRFYGSSGGRRSSDPSRV 173
>SB_5816| Best HMM Match : RVT_1 (HMM E-Value=3e-16)
Length = 904
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 174 LALVGTRGVGRRTLKNRLIQEYPDRFGAVIPHTC 275
L V TR + + L + + YP R +V+ HTC
Sbjct: 142 LVTVVTRPISKTCL-DHIFTNYPQRISSVVAHTC 174
>SB_55446| Best HMM Match : Sec7 (HMM E-Value=8.1)
Length = 344
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -3
Query: 356 RVRVALHLLAGYEPVRLTILFHRPRRTTRVWYDSTESIR 240
+VR ALH+LAG RL + H+ R + Y+ ++S R
Sbjct: 134 KVRYALHMLAGRAEDRL-LFDHQSRVAALLGYEDSDSKR 171
>SB_55151| Best HMM Match : Adeno_shaft (HMM E-Value=6.4)
Length = 402
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 151 LRPSCGVCWRLWARAASAGAPSRT 222
L+PS WR AR+A+ G P+RT
Sbjct: 355 LKPSPNRRWRAPARSATVGKPTRT 378
>SB_37419| Best HMM Match : Pox_A32 (HMM E-Value=0.24)
Length = 1497
Score = 27.1 bits (57), Expect = 7.6
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 160 SCGVCWRLWARAASAGAPSRTDSYRNILIDSVLSYHTRVVRLGRWKRMVSRTGSYP 327
+C WR P R RN+ +++ H VRL RW+R SR ++P
Sbjct: 1204 ACQHKWRNLKEVLVTSLPERQTGQRNLTNKLLMNLH---VRLRRWRR-ESRAPNHP 1255
>SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)
Length = 1388
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 260 DSTESIRIFLYESVLEGAPADAARAHKRQHTPQEGRSPRH 141
++ + I+L + +G P + R+ TPQEGR RH
Sbjct: 110 ENPRAFEIYLEKPKRKGDPGKMIK-WSRERTPQEGRQGRH 148
>SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2492
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 276 RPPRPMEENGQSYWFVSREEMER-DAHAGRFLEYGEHN 386
+P + ++++GQ YW+ +R +++G F GE +
Sbjct: 725 KPRKGVQQSGQQYWWSARSSTTTISSYSGSFSSVGEEH 762
>SB_30078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 26.6 bits (56), Expect = 10.0
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = -3
Query: 341 LHLLAGYEPVRLTILFHRPRRTTRVWYDSTESIRIFLYES--VLEGAPADAARAHKRQHT 168
+H L G + I+ H+ + ST I I Y + +P + AH+ H
Sbjct: 320 VHALTGIFTDTIIIIAHQYHYYPSISSSSTNIIIIHQYHHHPSISSSPINIIIAHQYHHR 379
Query: 167 PQEGRSPRHLLVERE 123
P SP ++++ +
Sbjct: 380 PSISSSPINIIISHQ 394
>SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)
Length = 1225
Score = 26.6 bits (56), Expect = 10.0
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 160 SCGVCWRLWARAASAGAPSRTDSYRNILIDSVLSYHTRVVRLGRWKRMVSRTGSYP 327
+C WR P R RN+ +++ H VRL RW+R SR ++P
Sbjct: 667 ACQHKWRNLKEVLVPSLPERRTGQRNLTNKLLMNLH---VRLRRWRR-ESRAPNHP 718
>SB_14439| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 213 LKNRLIQEYPDRFGAVIPHTCRPPRPMEE 299
+ +RL+ Y D+ + TC PP P+EE
Sbjct: 105 ISSRLLVVYIDKLLGLQVSTCVPPHPVEE 133
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,806,088
Number of Sequences: 59808
Number of extensions: 268844
Number of successful extensions: 1067
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -