Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_L18
(614 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy... 28 0.93
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 27 2.2
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 27 2.8
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 27 2.8
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 26 3.8
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 26 3.8
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ... 26 5.0
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 25 6.6
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch... 25 6.6
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 25 6.6
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy... 25 6.6
>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 28.3 bits (60), Expect = 0.93
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 537 ICKWKDSTRSCVIRELQSFGQYAKFHRY 454
+C+ DSTRSCVI + S Y+ Y
Sbjct: 366 VCECMDSTRSCVINDDVSSDDYSDLFSY 393
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 27.1 bits (57), Expect = 2.2
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 408 GYAIPPIYEVLPEYFNNGEILHTAQRI 488
GY +PP+Y++ + + E+L +Q I
Sbjct: 666 GYVLPPVYKITQIHSGDTELLQLSQEI 692
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = +3
Query: 9 DPVRTDDSVEFAKKQIDISLLYFHAREPNHVSKSITISASWSIENNINHYKNETAVKI 182
D +R +D + ++ L Y +A+ V + + A W NIN NE + +
Sbjct: 178 DAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNL 235
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 2.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 79 WKYNKEISICFFANST 32
WKYN ++ C+ NST
Sbjct: 116 WKYNPDLDYCYLDNST 131
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 26.2 bits (55), Expect = 3.8
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -3
Query: 537 ICKWKDSTRSCVIRELQSFGQYAKFHRY*NI--PVKPHILEE*RNLLSQNDEC 385
IC W T+S E + AK+HR+ +I V+ H E L S +D+C
Sbjct: 207 ICLWDVQTQSFTSSETKVISPIAKYHRHTDIVNDVQFHPQHE-ALLASVSDDC 258
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 15 VRTDDSVEFAKKQIDISLLYF 77
++ D +V+ +KKQI SLLYF
Sbjct: 262 IKKDSNVKCSKKQILFSLLYF 282
>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +2
Query: 35 RVREKADRYFLIILPCSRTKSRFEIYNYF 121
++R+ A + II+P S +K++ E+ +YF
Sbjct: 110 KLRDSASQIMDIIIPDSLSKAKVELLDYF 138
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 476 CPKDWSSRITHDRVLSFHL 532
CPK WS I H R SF +
Sbjct: 501 CPKVWSKIINHPRFESFDI 519
>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 445
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 27 DSVEFAKKQIDISLLYFHAREPNHVSKSITISASWSIENNINHYKNETAVK 179
+S+ K + S+L + A++ N+ + S+ WSI N + Y+N +K
Sbjct: 98 NSIHNQLKDLSSSILSY-AQDCNYPFSQMPSSSQWSIVRNSSWYENLKLLK 147
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 120 SASWSIENNINHYKNETAVKI 182
+ SWS ++ HYKNE A I
Sbjct: 276 NGSWSSTDDTKHYKNEWAESI 296
>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +3
Query: 495 HGSRMIEYYPSTYKWDNSVVIKVEYYCLALPLPK 596
H R + Y + KW N++ ++YY +A L +
Sbjct: 318 HQERCVLEYLESQKWINNITKDMKYYLIATYLSR 351
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,502
Number of Sequences: 5004
Number of extensions: 57511
Number of successful extensions: 145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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