Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L18
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)                   28   5.2  
SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)               28   6.9  
SB_23312| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_30130| Best HMM Match : Cadherin (HMM E-Value=0.0035)               28   6.9  
SB_56705| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)
          Length = 1333

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +3

Query: 408  GYAIPPIYEVLPEYFNNGEILHT-AQRIGVHGSRMIEYYPS--TYKWDNSVVIKVEY 569
            G A PP+ + L E   NG+ + T + +I  +G R +E + +   Y+W +S + ++ Y
Sbjct: 1274 GKARPPLIQALEEPLANGQDVRTISAKITNYGFRRVEDFDNMRRYEWRSSWLQQLGY 1330


>SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
          Length = 1243

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 516 YYPSTYKWDNSVVIKVEYYCLALP-LPKRFY 605
           Y P  YK+    +I V+ +C+ LP   KRFY
Sbjct: 357 YNPKIYKYCYGRIIPVKQHCIKLPRCGKRFY 387


>SB_23312| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 411 YAIPPIYEVLPEYFNNGEILHTAQR 485
           YA+P  Y  LP+Y NN E++   +R
Sbjct: 9   YAVPVFYNALPQYLNN-ELVRIEKR 32


>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1402

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 516 YYPSTYKWDNSVVIKVEYYCLALP-LPKRFY 605
           Y P  YK+    +I V+ +C+ LP   KRFY
Sbjct: 357 YNPKIYKYCYGRIIPVKQHCIKLPRCGKRFY 387


>SB_30130| Best HMM Match : Cadherin (HMM E-Value=0.0035)
          Length = 391

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 572 VVFDLNHDTIIPFVSGRIVLDHA*SVNSNPLGSMQN 465
           V FDLNH+T  PF      L +    +++PL   +N
Sbjct: 54  VTFDLNHNTYQPFTKPNAPLQYVHRESNHPLTITKN 89


>SB_56705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 252 HQFEAVIMFNVLYSAKDYDTFYKTTVY--MKDRVNQDLYIYVLSTLHIHR 395
           HQF   I+F+ ++    Y TF +        DR+  DL +Y +S   I R
Sbjct: 9   HQFPFNILFHKMFITHFYSTFIELAQLHDQHDRLELDLILYAISDALIIR 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,037,551
Number of Sequences: 59808
Number of extensions: 391427
Number of successful extensions: 925
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)