Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L18
         (614 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02620.1 68416.m00253 acyl-[acyl-carrier-protein] desaturase,...    29   3.2  
At3g57420.1 68416.m06393 expressed protein contains Pfam domain ...    28   5.7  
At3g55400.1 68416.m06153 methionyl-tRNA synthetase / methionine-...    27   9.9  
At1g74920.1 68414.m08691 betaine-aldehyde dehydrogenase, putativ...    27   9.9  

>At3g02620.1 68416.m00253 acyl-[acyl-carrier-protein] desaturase,
           putative / stearoyl-ACP desaturase, putative similar to
           Acyl-[acyl-carrier protein] desaturase from Spinacia
           oleracea SP|P28645, Olea europaea SP|Q43593; contains
           Pfam profile PF03405 Fatty acid desaturase
          Length = 396

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
 Frame = +3

Query: 90  PNHVSKSITISASWSIENNINHYKNETAVKIWILMKKQNWLLPLSVPF-SPLNPTHQFEA 266
           P H+  S T      + N + H    T  K+ I    +NW     + +  P+  + Q + 
Sbjct: 36  PRHLQVSKTFRPIKEVSNQVTH--TITQEKLEIFKSMENWAQENLLSYLKPVETSWQPQ- 92

Query: 267 VIMFNVLYSAKDYDTFYKTTVYMKDRVNQ--DLYIYVL 374
               + L   KD D FY+    ++DR  +  D Y  VL
Sbjct: 93  ----DFLPETKDEDRFYEQVKELRDRTKEIPDDYFVVL 126


>At3g57420.1 68416.m06393 expressed protein contains Pfam domain
           PF03385: Protein of unknown function, DUF288
          Length = 765

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 303 YDTFYKTTVYMKDRVNQDLYIYVLSTLHIHR 395
           Y   +KT V +  R N DLY+      HI++
Sbjct: 534 YGRIFKTVVILSSRKNSDLYVQEAKLDHIYK 564


>At3g55400.1 68416.m06153 methionyl-tRNA synthetase /
           methionine--tRNA ligase / MetRS (cpMetRS) identical to
           methionyl-tRNA synthetase MEtRS [Arabidopsis thaliana]
           GI:2266985
          Length = 616

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 303 YDTFYKTTVYMKDRVNQDLYIYVLSTLHIHRSDLEG 410
           YD F +TT    + + ++ Y  V +   I+R+D EG
Sbjct: 155 YDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEG 190


>At1g74920.1 68414.m08691 betaine-aldehyde dehydrogenase, putative
           identical to betaine-aldehyde dehydrogenase, chloroplast
           precursor (BADH) [Arabidopsis thaliana]
           SWISS-PROT:Q9S795; strong similarity to betaine aldehyde
           dehydrogenase [Amaranthus hypochondriacus] GI:2388710
          Length = 501

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 447 YFNNGEILHTAQRIGVHGSRMIEYYPSTYKWDNSVVI 557
           ++ NG+I     R+ VH S   E+     KW  ++ I
Sbjct: 287 FWTNGQICSATSRLLVHESIASEFIEKLVKWSKNIKI 323


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,345,505
Number of Sequences: 28952
Number of extensions: 279381
Number of successful extensions: 646
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)