Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L17
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    28   0.99 
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|...    28   1.3  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    27   2.3  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   4.0  
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe...    26   4.0  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   5.3  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    26   5.3  

>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +2

Query: 410 SESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAPQSRVSLRGVPDSPSKGSASPSGV 583
           ++  S  P +S R++G S     P   S +    P SRV++     S SK S SPS V
Sbjct: 217 NDKPSASPRISVRSLGNSSVVRPPTRTSTT---RPLSRVNVTNASGSISKNSTSPSKV 271


>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
           Snu23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 14/116 (12%)
 Frame = +2

Query: 326 DIYNSQRSRRTSESAEKVGLSGGRVRKVS-ESRSEGPTLSPRAVGLSPHRSAPAMRSLSY 502
           D YN  R    S+  E V ++GGR +++  E      T+ PR     P R     + L  
Sbjct: 2   DRYNPPRRNGNSKKNEVV-ITGGRTQRIDFEKDVNKTTILPRWSFGRPKRPWSCTQHLRK 60

Query: 503 CRAP--QSRVSLRGVPD----------SPSKGSASPSGVAREEKFHSRL-VEKLKR 631
            R    + R +L  V +           P KGS   S   R E++H  L  +KL+R
Sbjct: 61  TRTVIIEKRATLEEVKERMEYWRRQLLEPEKGSEEYSLKERVERYHQELEAKKLRR 116


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 22/87 (25%), Positives = 37/87 (42%)
 Frame = +2

Query: 362 ESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAPQSRVSLRGV 541
           ES E   +   +  +  +S+ E P  +P +   S   S P    LSY ++ + RVS R  
Sbjct: 244 ESDEVASIIDIKEDETFDSKVEIPEAAPSSSTESDEESIP----LSY-QSKRRRVSARAS 298

Query: 542 PDSPSKGSASPSGVAREEKFHSRLVEK 622
             + S        +   E+ H RL+ +
Sbjct: 299 SSASSSSRTQAKSIPSHERTHYRLIRQ 325


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 296 FMMPVVKNDWDIYNSQRSRRTSESAEKV 379
           F+  V++N W +Y S  S R  E+ EK+
Sbjct: 280 FVQFVLENLWAVYESAVSNRNLENIEKI 307


>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 473 SAPAMRSLSYCRAPQSRVSLRGVPDSPSKGSAS 571
           S P MR L     P+S  S +GV D+  +G++S
Sbjct: 4   STPPMRGLCTPSTPESPGSFKGVIDASLEGNSS 36


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1050

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
 Frame = +2

Query: 383  LSGGRVRKVSESRSEGPTLSPRAVGLSPH----RSAPAMRSLSYCRAPQSRVSLRGVPDS 550
            +SG   R  S  +S  P   P +  L PH    +S     S         + + R   DS
Sbjct: 879  MSGYNFRSASFDKSAPPLSVPLSFRLGPHMHSVKSFETESSFGNRSLSPKQENRRTYSDS 938

Query: 551  PSKGSASPSGVAREEKFHSRLVEKLK 628
              + S  P+ V RE+    RL  K K
Sbjct: 939  TIESSLMPN-VVREDSSSDRLAPKKK 963


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +2

Query: 299 MMPVVKNDWDIYNSQRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSP 445
           ++P ++  W      + +  SESA+   +SG + R  S+   + P   P
Sbjct: 480 LIPTIRETWTRKGITQKQHYSESADPTAISGMKRRAHSDRVFDFPPCDP 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,288,204
Number of Sequences: 5004
Number of extensions: 40783
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)