Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_L17
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 35 0.047
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949... 34 0.11
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 34 0.11
07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758 32 0.44
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98... 31 0.58
11_01_0115 - 889159-889921,889962-890053,890141-890359,890738-89... 31 0.77
12_01_0125 - 946480-947242,947283-947374,947462-947680,948059-94... 31 1.0
11_02_0060 + 7897868-7898296 30 1.3
03_01_0176 - 1416316-1416405,1416705-1416761,1416885-1417010,141... 30 1.3
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 30 1.3
05_01_0177 + 1231679-1231753,1232259-1232546,1232608-1232685,123... 30 1.8
01_01_1142 - 9057212-9057541,9058650-9058754,9058826-9058919,905... 30 1.8
03_06_0562 + 34732027-34733121 29 3.1
03_02_0472 - 8737955-8738580,8738704-8738767,8739090-8739239,873... 29 3.1
08_01_0611 - 5372966-5372992,5373965-5374024,5374260-5374365,537... 29 4.1
04_04_0095 - 22775340-22776017 29 4.1
03_02_0609 - 9823120-9823573,9823903-9824102,9824240-9824335,982... 29 4.1
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 29 4.1
06_01_0749 + 5599238-5600128 28 5.4
05_07_0084 - 27587307-27589175 28 5.4
02_04_0169 + 20554715-20555083,20555150-20555632,20557926-205580... 28 5.4
11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45... 28 7.2
09_02_0470 + 9629062-9629355,9629948-9630893,9630948-9631102,963... 28 7.2
01_04_0036 - 15328741-15329868 28 7.2
10_01_0115 - 1426573-1426590,1426838-1426912,1427106-1427464,142... 27 9.5
09_03_0187 - 13253787-13254509 27 9.5
07_01_0640 + 4788530-4788645,4788665-4788830,4788913-4789224 27 9.5
02_05_0655 + 30668706-30668849,30669043-30669471 27 9.5
01_06_0390 - 28938485-28938751,28939924-28941282 27 9.5
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 35.1 bits (77), Expect = 0.047
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = +2
Query: 329 IYNSQRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCR 508
++ + ++ SE + +SG R R + S P SP G SP+RS SY R
Sbjct: 115 VFAEENRKKPSEMRSRDRISGSRGRSYDQRYSRSPRYSPPPRGRSPYRSP------SYSR 168
Query: 509 APQSRVSLR 535
+P R + R
Sbjct: 169 SPSPRYARR 177
>04_04_1237 -
31991817-31992569,31993452-31993550,31994343-31994976,
31995329-31995585
Length = 580
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = -3
Query: 583 DTRRASRTLAGAVGNPTE*HSGLRRAAVRQRAHSRRAAMRTQPDGARRQR 434
+TRR R VG + H G+ AA RA RR +R G RR+R
Sbjct: 361 ETRRCRRVAVVEVGEQQQGHQGVAAAAAVVRAVGRRLVVRRGGGGRRRRR 410
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 33.9 bits (74), Expect = 0.11
Identities = 36/100 (36%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Frame = +2
Query: 320 DWDIYNSQRSRRTSES-AEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSL 496
DW +R R S S + + G S GR S SRS + SPR + RS S
Sbjct: 128 DWKNRCYRRGRSYSRSPSPRRGRSRGRSYSRSRSRSYSRSQSPRRDSRNERRSRSPRDSR 187
Query: 497 SYCRAPQSRVSLRGVP-DSPS-KGS----ASPSGVAREEK 598
S +P+ S RG P DS S KGS SP G R+ +
Sbjct: 188 SPRGSPRDSRSPRGSPRDSRSPKGSPRDTQSPRGSPRDSR 227
>07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758
Length = 223
Score = 31.9 bits (69), Expect = 0.44
Identities = 26/64 (40%), Positives = 30/64 (46%)
Frame = +2
Query: 395 RVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAPQSRVSLRGVPDSPSKGSASP 574
R R S S +P A GLS S+P S S AP+SR S R SP G+ASP
Sbjct: 40 RARAGPSSPSSSSPSTPTAAGLS-FLSSPGS-SASPNPAPRSRSSRRSPLASPRTGTASP 97
Query: 575 SGVA 586
A
Sbjct: 98 LSAA 101
>05_01_0148 -
985745-986180,986290-986385,986498-986694,986824-986919,
987020-987059,987751-987857
Length = 323
Score = 31.5 bits (68), Expect = 0.58
Identities = 27/81 (33%), Positives = 34/81 (41%)
Frame = +2
Query: 338 SQRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAPQ 517
S RR + S R R S SRS + SPRA R RSLSY R+P+
Sbjct: 155 SPSPRRGRGRSRSYSRSRSRSRSYSRSRSRSLSGSPRA-----RRELERSRSLSYSRSPR 209
Query: 518 SRVSLRGVPDSPSKGSASPSG 580
+S + K S +P G
Sbjct: 210 RSISPAA---NEKKRSPTPDG 227
>11_01_0115 -
889159-889921,889962-890053,890141-890359,890738-891835
Length = 723
Score = 31.1 bits (67), Expect = 0.77
Identities = 23/83 (27%), Positives = 40/83 (48%)
Frame = +2
Query: 350 RRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAPQSRVS 529
+ SE+A +S + R S + S+ SP G + S+P+++ S +P R +
Sbjct: 174 KSVSEAAPPPAVSAAKRRFSSPAPSKQRDPSPSVKGGASRPSSPSVKGASRASSPAVRGT 233
Query: 530 LRGVPDSPSKGSASPSGVAREEK 598
R +PSK PS V+ +E+
Sbjct: 234 PRATSPAPSK-CVVPSLVSAKEE 255
>12_01_0125 -
946480-947242,947283-947374,947462-947680,948059-949156
Length = 723
Score = 30.7 bits (66), Expect = 1.0
Identities = 23/83 (27%), Positives = 39/83 (46%)
Frame = +2
Query: 350 RRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAPQSRVS 529
+ E+A +S + R S + S+ SP G + S+P+++ S +P R +
Sbjct: 174 KNVPEAAPPPAVSAAKRRFSSPAPSKQRDPSPSVKGGASRPSSPSVKGASRASSPAVRGT 233
Query: 530 LRGVPDSPSKGSASPSGVAREEK 598
R +PSK PS VA +E+
Sbjct: 234 PRATSPAPSK-CVVPSLVAAKEE 255
>11_02_0060 + 7897868-7898296
Length = 142
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 559 LAGAVGNPTE*HSGLRRAAVRQRAHSRRAAMRTQPDGARRQRW 431
LA P+ S L AA R R + AA R +PD A ++RW
Sbjct: 9 LASCFRPPSSSSSSLSAAAAR-RGRRQEAAARRRPDKAEKRRW 50
>03_01_0176 -
1416316-1416405,1416705-1416761,1416885-1417010,
1417944-1418150,1418235-1418714
Length = 319
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +2
Query: 422 SEGPTLSPRAVGLSPHRSAPAMRSLSYCRAPQSRVSLRGVPDSPSKGSASPSGVAR 589
+ P LSP AV + HRS PA+ L++ P R++ VP + G P AR
Sbjct: 9 ARAPLLSPAAVAAA-HRSPPALLRLAFAPLPARRLA---VPLRVAVGEPEPEEDAR 60
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 30.3 bits (65), Expect = 1.3
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = +2
Query: 341 QRSRRTSESAEK-VGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAPQ 517
+RS S EK + +S R R S+S P L ++V +SP RS S R+P
Sbjct: 453 ERSESRSPPREKSISMSPQR-RSARRSKSRSP-LREKSVSMSPRRSMSKSLPRSVSRSPV 510
Query: 518 SRVSLRGVPDSPSKGSASPSGVAREEKFHSRLVEK 622
+R S R + ++ + S + + + SR +E+
Sbjct: 511 ARRS-RSPVKARTRSISRSSARSLQRRSRSRSLER 544
>05_01_0177 +
1231679-1231753,1232259-1232546,1232608-1232685,
1233458-1233673,1233862-1233981,1234079-1234804
Length = 500
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 14/80 (17%)
Frame = +2
Query: 401 RKVSESRSEGPTLSPRA-----VGLSPHRSAPAMRSLSYCRAPQ------SRVSLRGVPD 547
RK++ S P L+P A V + P P ++ + + P+ V++ VP+
Sbjct: 29 RKLAASNPNPPDLTPSASLEVNVSVPPPPPPPPVQQIEEVKVPEVEQEQSKHVTVEAVPE 88
Query: 548 S---PSKGSASPSGVAREEK 598
+ P++ S+ P GV+REE+
Sbjct: 89 AVPVPAQTSSLPPGVSREEQ 108
>01_01_1142 -
9057212-9057541,9058650-9058754,9058826-9058919,
9059721-9059917
Length = 241
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 594 SSRATPDGLAEPLLGLSGTPRSDTLDCGARQYDSERIAGALR 469
S+ A+ D +AE + SD +DCG + R+AG LR
Sbjct: 7 SASASGDPMAECPPAAAAAEGSDAMDCGGGGRSNARVAGVLR 48
>03_06_0562 + 34732027-34733121
Length = 364
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +2
Query: 374 KVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAPQS-RVSLRGVPDS 550
K +GG+++K S + L S P L+ C+ +S R S G P
Sbjct: 111 KGSAAGGKLQKFSYKIKTALGAVVKPGWLMVEFSFPGSDHLALCKVYRSPRTSRYGAPSP 170
Query: 551 PSKGSASPSGVA 586
PS ++SPS A
Sbjct: 171 PSSAASSPSRAA 182
>03_02_0472 -
8737955-8738580,8738704-8738767,8739090-8739239,
8739311-8739422,8739686-8739708
Length = 324
Score = 29.1 bits (62), Expect = 3.1
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Frame = +2
Query: 314 KNDWDIYNSQRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRS---APA 484
+ + Y+++ SRR S S+ + G R R S R +SP+ +P+
Sbjct: 196 RRSYSPYDTRGSRRRSYSSYR----GSRYRSRSPYRYRRERSCSYDHSVSPYYRRCYSPS 251
Query: 485 MRSLSYCRA--PQSRVSLRGVPDSPSKGSASPSGVAREEK 598
R SY R+ PQ S PDS GS SP E K
Sbjct: 252 ARGRSYSRSVSPQRSYSHSCSPDSQRSGSYSPRKRYSERK 291
>08_01_0611 -
5372966-5372992,5373965-5374024,5374260-5374365,
5374481-5374626,5375654-5375733,5375962-5376064,
5376597-5376675,5376854-5377134,5377374-5377548,
5377645-5377679
Length = 363
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 410 SESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAPQSR 523
+E S PR +G+S HR +R L C+ P ++
Sbjct: 138 AEINSRADEYWPRVMGISTHRKIGVVRELRECKKPTAQ 175
>04_04_0095 - 22775340-22776017
Length = 225
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 434 TLSPRAVGLSPHRSAPAMRSLSYCRAPQSRVSLRGVPDSPSKGS 565
T +P + G + R +PA R LS C+AP+ V +R + + + G+
Sbjct: 139 TPAPASSGSTWLRLSPACRELSGCKAPKLLVEVRMIHAADNYGA 182
>03_02_0609 -
9823120-9823573,9823903-9824102,9824240-9824335,
9824454-9824567,9824711-9824774,9825206-9825312
Length = 344
Score = 28.7 bits (61), Expect = 4.1
Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = +2
Query: 335 NSQRSRRTSESAEKVGL---SGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSYC 505
N RSR S S G R R +S SRS ++SP A G + S RS
Sbjct: 192 NLSRSRSRSLSGSPRGRRDRDDRRSRSLSYSRSPRRSISPAANGKERNPSPNGRRS---P 248
Query: 506 RAPQSRVSLRGVPDSPSKGSASPSG 580
R+PQ RVS D+ + SP G
Sbjct: 249 RSPQDRVS-PPPKDNDERNGDSPWG 272
>02_01_0084 -
573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 28.7 bits (61), Expect = 4.1
Identities = 30/87 (34%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Frame = +2
Query: 380 GLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAPQSRVSLRGVPDSPSK 559
G GG + + PT S R G +P SAP + A R LRG PD P+
Sbjct: 13 GRGGGSTARANAGTGY-PTRS-RTSG-NPQFSAPTNGANQRAMA-SLRSPLRGGPDMPTS 68
Query: 560 GSASP--SGVAREEKFHSRLVEKLKRA 634
SP SG ++E V LKRA
Sbjct: 69 RRCSPRLSGTQQDEVAEVARVGMLKRA 95
>06_01_0749 + 5599238-5600128
Length = 296
Score = 28.3 bits (60), Expect = 5.4
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +2
Query: 335 NSQRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHR-SAPAMRSLSYCRA 511
+S RS++ S S+ + R +R+ P+LSPR G +P R S R S A
Sbjct: 27 SSPRSKKRSSSSRRAAAGDRR----PAARAPNPSLSPRGGGGAPSRKSERRRRPRSLAMA 82
Query: 512 PQSRVSLRGVP 544
S G P
Sbjct: 83 VHGHASTSGGP 93
>05_07_0084 - 27587307-27589175
Length = 622
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -1
Query: 534 RSDTLDCGARQYDSERIAGALRCGLSPTARGDSVGPSERDSDTFRTRPPLSPTFSADSEV 355
R T+DC A + + GALR + T S G + D + +T F D V
Sbjct: 154 REGTMDCWAHAVEFDYSTGALRSLKTATDTWCSSGAFDADGNLIQT----GGYFEGDKAV 209
Query: 354 RR-DRCE 337
RR D C+
Sbjct: 210 RRLDACD 216
>02_04_0169 +
20554715-20555083,20555150-20555632,20557926-20558003,
20558141-20558143
Length = 310
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -2
Query: 455 RRREATALAPRNATLTLSAHDLRSAQPSPQTPKYVETAANCICP 324
R+RE +LA R A L L SA P P P + A + P
Sbjct: 150 RKRERNSLAARCARLGLGGSSSSSAPPPPPPPAAADDTAAVMPP 193
>11_01_0061 -
456521-457389,457534-457659,458377-459307,459564-459581,
459924-460183,461834-461918,462587-462919,463053-463137,
463289-463374,463455-463556,463656-463795,464332-464658,
464778-465389,465502-465586,465587-465682,465762-466115,
466212-466322,466426-466509,467086-467164,467742-467899,
468034-468150,468240-468398,468475-468557,469098-469200,
470784-471080
Length = 1899
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 582 TPDGLAEPLLGLSGTPRSDTLD 517
+PDGLA+PLL S P + LD
Sbjct: 817 SPDGLADPLLSSSAAPSNMGLD 838
>09_02_0470 + 9629062-9629355,9629948-9630893,9630948-9631102,
9631299-9631358,9633374-9633444,9633626-9633663,
9633824-9633876,9633970-9635235,9635632-9635672,
9636821-9636887
Length = 996
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = -1
Query: 351 RDRCELYMSQSFLTTG-----IINAISAAATVTLEFERF*GNNVNCMTKNCSSITENST 190
RDR + MS S ++TG + + V L+F+ + +N+ C T N + +TE ++
Sbjct: 855 RDRYGVEMSCSSISTGGNGRGLPLNLKNKKIVVLQFQIYVHHNIRCSTDNANLVTEETS 913
>01_04_0036 - 15328741-15329868
Length = 375
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 470 RSAPAMRSLSYCRAPQSRVSLRGVPDSPSKGSASPSGVAREEKFH--SRLVEKLK 628
R A + + +C P V L+ VP+ + G+ P R K H +L EKLK
Sbjct: 304 RDAVRLSWVVFCEPPPESVLLQPVPELLADGADKPLFAPRTFKQHVQRKLFEKLK 358
>10_01_0115 -
1426573-1426590,1426838-1426912,1427106-1427464,
1427551-1427656,1428091-1428207,1428319-1428420,
1428520-1428613,1428697-1428746,1429029-1429106,
1429189-1429455,1429573-1429672,1429757-1430039,
1430312-1430357
Length = 564
Score = 27.5 bits (58), Expect = 9.5
Identities = 20/55 (36%), Positives = 25/55 (45%)
Frame = +2
Query: 401 RKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAPQSRVSLRGVPDSPSKGS 565
RK+S +R E PTLSP L P P S C P ++ + SKGS
Sbjct: 354 RKISRARIEHPTLSPVCEELPP-MMLPTPGSPYSCDVPMVEKAIDAI--CQSKGS 405
>09_03_0187 - 13253787-13254509
Length = 240
Score = 27.5 bits (58), Expect = 9.5
Identities = 22/72 (30%), Positives = 30/72 (41%)
Frame = -1
Query: 594 SSRATPDGLAEPLLGLSGTPRSDTLDCGARQYDSERIAGALRCGLSPTARGDSVGPSERD 415
++ A G P LG++G S+ G+ E IAGA C SP R S D
Sbjct: 55 AAEARTTGSGAPKLGMAGFATSEFRVFGSGSRGGEGIAGA--C--SPHGRSTSTTRGGAD 110
Query: 414 SDTFRTRPPLSP 379
+R L+P
Sbjct: 111 GGPLTSRTDLAP 122
>07_01_0640 + 4788530-4788645,4788665-4788830,4788913-4789224
Length = 197
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 461 SPHRSAPAMRSLSYCRAPQSRVSLRGVPD-SPSKGSASPSGVAREEKFH 604
+PHR + R++ P+ R+S R V SP KGS P G A E F+
Sbjct: 5 APHRHSILNRTI----VPR-RISARHVSAASPDKGSGGPQGAAVNEAFN 48
>02_05_0655 + 30668706-30668849,30669043-30669471
Length = 190
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = +2
Query: 374 KVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAPQSRVSLRGVPDSP 553
K SG +R S P L A PH + P+ R + +S + L G P
Sbjct: 51 KTSQSGSLLRLGLVSPCSAPPLPTAAAYTPPHTNTPSSRRRHHAPLVRSGLRLLGSSRHP 110
Query: 554 SKGS 565
+GS
Sbjct: 111 RRGS 114
>01_06_0390 - 28938485-28938751,28939924-28941282
Length = 541
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 558 LLGLSGTPRSDTLDCGARQYDSERIAGALRCGLSP-TARGDSVGPS 424
++G G + C AR+ DSER G ++P ARG+ GP+
Sbjct: 139 MVGADGRAKLADFGC-ARRTDSERPIGGTPAFMAPEVARGEEQGPA 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,031,783
Number of Sequences: 37544
Number of extensions: 323549
Number of successful extensions: 1297
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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