Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_L17
(639 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_40595| Best HMM Match : Pkinase (HMM E-Value=3.4e-08) 32 0.45
SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32) 31 1.0
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_22024| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.2) 30 1.4
SB_47708| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19) 30 1.8
SB_44186| Best HMM Match : HEAT (HMM E-Value=1.8e-05) 30 1.8
SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19) 30 1.8
SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5) 30 1.8
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 29 3.2
SB_5969| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_28998| Best HMM Match : eIF_4EBP (HMM E-Value=4.5) 28 5.6
SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042) 28 5.6
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 28 7.4
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 27 9.7
SB_5727| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 27 9.7
SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11) 27 9.7
>SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1015
Score = 33.5 bits (73), Expect = 0.15
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Frame = -1
Query: 441 DSVGPSER--DSDTFRTRPPLSPTFSADSEVRRDRCELYMSQSFLTTGIINAISAAATVT 268
DS G SE D+D + PL ++ + R C L ++TT + + A T
Sbjct: 254 DSGGSSELRCDNDLSEAKEPLVQRIASLTMTRHQACRLRELGQWITTHDWSNLFGAHTCQ 313
Query: 267 LEFERF*GNNVNCMTKNCSSITENSTPIDNP 175
+F+ F + + + C S S P D P
Sbjct: 314 AKFDVFYNTITDALDRFCPSTVVRSHPSDKP 344
>SB_40595| Best HMM Match : Pkinase (HMM E-Value=3.4e-08)
Length = 335
Score = 31.9 bits (69), Expect = 0.45
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +2
Query: 353 RTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPA-MRSLSYCRAPQSRVS 529
R+S + G + GR+R + P + V + HR APA + R SR+S
Sbjct: 231 RSSTTRALPGTATGRLRDPIGGPAASPVEREKRVSMRLHRGAPADVSPADMPRGDMSRMS 290
Query: 530 LRGVPDSPSKGSASPSGVAREEKFHSR 610
V +P+ +A PSG A + R
Sbjct: 291 GAHVRSTPAMATA-PSGSAMRRSWTGR 316
>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 31.5 bits (68), Expect = 0.60
Identities = 33/96 (34%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Frame = +2
Query: 335 NSQRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAP 514
+ Q S RT+ S R SESRS+ PR VG + +PA S+ R
Sbjct: 179 HGQHSSRTAVRRSASFSSSQRRTSESESRSKPAVGKPRPVGNASVVRSPAD---SFRREK 235
Query: 515 QSRVSLRG----VPDSPSK-----GSASPSGVAREE 595
V++RG P SP + S SPSGV RE+
Sbjct: 236 SDVVTVRGRGTQSPSSPRREISDLKSRSPSGVRREK 271
>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
Length = 1168
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +2
Query: 395 RVRKVSESRSEGPTLSPRAVG---LSPHRSAPAMRSLSYCRAPQSRVSLRGVPDSPSKGS 565
+++ S R P +SP G L PH S P+ ++ + +APQS P S
Sbjct: 483 QIQPSSWPRGNAPNMSPVGTGSGSLPPHMSLPSYAAVLHGQAPQSMPGRTSFPSQHSISM 542
Query: 566 ASPSG 580
S G
Sbjct: 543 TSSLG 547
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 30.7 bits (66), Expect = 1.0
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +2
Query: 335 NSQRSRRT-SESAEKVGLSGG---RVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSY 502
++++ R++ SES ++V S R R +SR P+ SP P RS P S S
Sbjct: 1022 SAKKERQSHSESPQRVTKSSKERPRKRPRHQSRERRPSSSP------PRRSRPQRTSPSP 1075
Query: 503 CRAPQSRVSLRGVPDSPSKGSASP 574
R P+ R RG SPS P
Sbjct: 1076 RRTPEDRRRSRGSRRSPSPPKREP 1099
Score = 27.9 bits (59), Expect = 7.4
Identities = 24/85 (28%), Positives = 32/85 (37%)
Frame = +2
Query: 311 VKNDWDIYNSQRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMR 490
+K + D Y R + S + S R S SRS P R+ P R +P
Sbjct: 599 IKKERDSYRKSRDKGRKRSQSRSS-SRSRSSSYSRSRSRSPDRRKRSYSPPPRRRSPFRE 657
Query: 491 SLSYCRAPQSRVSLRGVPDSPSKGS 565
R+P R S R SP + S
Sbjct: 658 RR---RSPPRRTS-RWSSQSPDRRS 678
>SB_22024| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.2)
Length = 953
Score = 30.3 bits (65), Expect = 1.4
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Frame = -1
Query: 594 SSRATPDGLAEPLL--GLSGTPRSDTLDCGARQYDSERIAGALRCGLSPTARGD-SVGPS 424
+ R P GL+ L + T S ++ R DS A LR SV P
Sbjct: 808 TGRLAPSGLSLHALPRNIDRTSSSKSIS-SKRSSDSGPSAYTLRVRRENLRTSSLSVTPP 866
Query: 423 ERDSDTFRTRPPLSPTFSADSEVRRDRCELYMSQSFLTTGI 301
ER + +T P PT + + RR + E+Y+S S T G+
Sbjct: 867 ER---SLQTPVPPKPTEAQKRKARRVKLEMYLSMSLNTQGV 904
>SB_47708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -1
Query: 243 NNVNCMTKNCSSITENSTPIDN 178
N ++CMT+N S ++EN T +DN
Sbjct: 78 NMLSCMTQNISLLSENETRLDN 99
>SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 818
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -1
Query: 462 LSPTARGDSVGPSERDSDTFRTRPPLSPTFSAD-SEVRRDRCELYMSQSFLTTGIINAIS 286
L A+ D+ G + +F PP SPT A+ S + + + Y+++S L + A +
Sbjct: 503 LQQRAKQDNPGSPLIPTPSFEPIPPPSPTSLANASRLYGNNAQQYINESLLQSNAAAAAA 562
Query: 285 AAATVTLEF 259
AAA + ++
Sbjct: 563 AAAAASRKY 571
>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
Length = 1883
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -1
Query: 438 SVGPSERDSDTFRTRPPLSPTFSADSEVRRDRCELYMSQSFLTTGI 301
SV P ER + +T P PT + + RR + E+Y+S S T G+
Sbjct: 938 SVTPPER---SLQTPVPPKPTEAQKRKARRVKLEMYLSMSLNTQGV 980
Score = 29.1 bits (62), Expect = 3.2
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Frame = -1
Query: 594 SSRATPDGLAEPLL--GLSGTPRSDTLDCGARQYDSERIAGALRCGLSPTARGDS--VGP 427
+ R P GL+ L + T S ++ R DS A LR + R S V P
Sbjct: 1738 TGRLAPSGLSLHALPRNIDRTSSSKSIS-SKRSSDSGPSAYTLRV-VRENLRTSSLLVTP 1795
Query: 426 SERDSDTFRTRPPLSPTFSADSEVRRDRCELYMSQSFLTTGI 301
ER + +T P PT + + RR + E+Y+S S T G+
Sbjct: 1796 PER---SLQTPVPPKPTEAQKRKARRVKLEMYLSMSLNTQGV 1834
>SB_44186| Best HMM Match : HEAT (HMM E-Value=1.8e-05)
Length = 872
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 431 PTLSPRAVGLSPHRSAPAMRSLSYCRAPQSRVSLRGVPD-SPSKGSASPS 577
P SP V SP +A R L RA S L P+ SPSK SASP+
Sbjct: 783 PHSSPAGVVTSPSVTAVPKRLLKSKRA-MSEADLANTPEKSPSKTSASPA 831
>SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)
Length = 1026
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -1
Query: 438 SVGPSERDSDTFRTRPPLSPTFSADSEVRRDRCELYMSQSFLTTGI 301
SV P ER + +T P PT + + RR + E+Y+S S T G+
Sbjct: 935 SVTPPER---SLQTPVPPKPTEAQKRKARRVKLEMYLSMSLNTQGV 977
>SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)
Length = 754
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -1
Query: 438 SVGPSERDSDTFRTRPPLSPTFSADSEVRRDRCELYMSQSFLTTGI 301
SV P ER + +T P PT + + RR + E+Y+S S T G+
Sbjct: 663 SVTPPER---SLQTPVPPKPTEAQKRKARRVKLEMYLSMSLNTQGV 705
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +2
Query: 341 QRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRA-PQ 517
Q + ++S S+ +SG +K + + ++SP+ G +S+P + ++ + P
Sbjct: 555 QNTPQSSSSSSTSNISGVDQQKQATQQESQTSVSPQTSGTDQSQSSPLEKEVAKQESQPN 614
Query: 518 SRVSLRGVPDSPSKGSASPSGV 583
G +SP+ S SP V
Sbjct: 615 VSPQSGGKQESPANTSPSPERV 636
>SB_5969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -1
Query: 438 SVGPSERDSDTFRTRPPLSPTFSADSEVRRDRCELYMSQSFLTTG 304
SV P E+ T PP PT + + RR++ E+Y+S S T G
Sbjct: 170 SVTPPEKSPQT--PLPP-KPTKAQKRKARREKLEMYLSMSLNTQG 211
>SB_28998| Best HMM Match : eIF_4EBP (HMM E-Value=4.5)
Length = 561
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -1
Query: 459 SPTARGDSVGPSERDSDTFRTRPPLSPTFSADSEVRRDRCELYMSQSFLTTG 304
SP A SV P E+ T PP PT + + RR + E+Y+S S G
Sbjct: 347 SPGASSLSVTPPEKGPQT--PLPP-KPTKAQKRKARRAKLEMYLSMSLNAQG 395
>SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1218
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 317 NDWDIYNSQRSRRTSESAEKVGLSGGRVRKVSESRSE 427
N +D+ ++SRR E GL GR+R++ + + E
Sbjct: 1093 NQYDVTLEEKSRRLRELESAGGLWEGRIRELEKQKQE 1129
>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
Length = 792
Score = 28.3 bits (60), Expect = 5.6
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 338 SQRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSP-RAVGLSPHRSAPAMRSLSYCRAP 514
S RSR S SA + S VR S SRS P+LSP R+ S RS +S+S P
Sbjct: 414 SSRSRSYSRSASR-SYSRSPVR--SWSRSHSPSLSPQRSRSYSRSRSRSFSKSISGSPTP 470
Query: 515 Q 517
+
Sbjct: 471 K 471
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 27.9 bits (59), Expect = 7.4
Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 4/112 (3%)
Frame = +2
Query: 251 KRSNSRVTVAAAEMAFMMPVVKNDWDIYNSQRSRRTSESAEKVGLSGGRVRKVSESRSEG 430
KRS SR + + + ++ + QRSR + S+++ S + S SRS
Sbjct: 228 KRSESRSRSRSPKKSRSARRSRSPQKSRSPQRSR-SPRSSKRYRSSRSHRKHRSHSRSRS 286
Query: 431 P----TLSPRAVGLSPHRSAPAMRSLSYCRAPQSRVSLRGVPDSPSKGSASP 574
P + SPR S RS R S CR +SR R S SP
Sbjct: 287 PRSKRSRSPRKRRRSKSRSPRRYRDSSSCRRRRSRSRSRSPKSRLRSRSRSP 338
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.5 bits (58), Expect = 9.7
Identities = 24/73 (32%), Positives = 34/73 (46%)
Frame = +2
Query: 359 SESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAPQSRVSLRG 538
S +++ G+S G S + G +SP SP+ +PA S Y +P S +
Sbjct: 367 SAASDASGMSPGGFSPSWMSPTPGSPVSPGPT--SPYIPSPAAASPGY--SPSSPAFM-- 420
Query: 539 VPDSPSKGSASPS 577
P SPS ASPS
Sbjct: 421 -PSSPSMSPASPS 432
>SB_5727| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 904
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 119 FNNLWILDITSKHKALPSNYQLLL 48
FN W++ T K KA+PS ++L+
Sbjct: 686 FNYQWVIPFTYKTKAMPSEKKMLI 709
>SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11)
Length = 2297
Score = 27.5 bits (58), Expect = 9.7
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 13/129 (10%)
Frame = +2
Query: 251 KRSNSRVTVAAAEMAFMMPVVKNDWDIYNSQRSRRTSESAEKVGLSGGRVRKVSESRSEG 430
+R S + ++++ P +K ++ QR R++S S+ R R+ S S SEG
Sbjct: 1289 RRDRSSSSSSSSDDEIKAPRIKGGLELAK-QRHRKSSSSSSDGEKQRRRRRRKSSSGSEG 1347
Query: 431 PTL----SPRAVGLSPHRSAPAMRSLSYCRAPQS---------RVSLRGVPDSPSKGSAS 571
+ PR + +A S S P + ++G+P S S ++S
Sbjct: 1348 KSKLGFKGPRMPIVEADITAERKSSASSLSGPDGTTKFGVDVEKPKIKGLPKSNSSSTSS 1407
Query: 572 PSGVAREEK 598
S + EEK
Sbjct: 1408 SSSSSDEEK 1416
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,885,721
Number of Sequences: 59808
Number of extensions: 336069
Number of successful extensions: 1150
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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