Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_L17
(639 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 31 0.65
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 31 0.65
At2g41550.1 68415.m05135 expressed protein 30 1.1
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 30 1.5
At4g31620.1 68417.m04492 transcriptional factor B3 family protei... 29 3.4
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 29 3.4
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 29 3.4
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 29 3.4
At5g45573.1 68418.m05598 hypothetical protein 28 4.5
At4g29440.1 68417.m04203 expressed protein contains Pfam profil... 28 4.5
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 28 4.5
At2g06020.1 68415.m00658 myb family transcription factor contain... 28 4.5
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 28 4.5
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 28 4.5
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 28 6.0
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 28 6.0
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 28 6.0
At3g50810.1 68416.m05564 integral membrane protein, putative con... 28 6.0
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea... 27 7.9
At3g08850.1 68416.m01029 transducin family protein / WD-40 repea... 27 7.9
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 31.1 bits (67), Expect = 0.65
Identities = 31/87 (35%), Positives = 40/87 (45%)
Frame = +2
Query: 335 NSQRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAP 514
+S RSR S + + S R R +S S S ++S S RS P R S P
Sbjct: 20 SSSRSRSGSSPSRSISRSRSRSRSLSSSSSPSRSVS------SGSRSPPR-RGKSPA-GP 71
Query: 515 QSRVSLRGVPDSPSKGSASPSGVAREE 595
R R P PSKG++SPS A +E
Sbjct: 72 ARRG--RSPPPPPSKGASSPSKKAVQE 96
Score = 28.7 bits (61), Expect = 3.4
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = +2
Query: 410 SESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAPQSRVSLRGVPDSPSKGSASPSGVAR 589
S SRS + S + S RS RSLS +P VS G P +G SP+G AR
Sbjct: 16 SSSRSSSRSRSGSSPSRSISRSRSRSRSLSSSSSPSRSVS-SGSRSPPRRGK-SPAGPAR 73
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 31.1 bits (67), Expect = 0.65
Identities = 31/87 (35%), Positives = 40/87 (45%)
Frame = +2
Query: 335 NSQRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAP 514
+S RSR S + + S R R +S S S ++S S RS P R S P
Sbjct: 20 SSSRSRSGSSPSRSISRSRSRSRSLSSSSSPSRSVS------SGSRSPPR-RGKSPA-GP 71
Query: 515 QSRVSLRGVPDSPSKGSASPSGVAREE 595
R R P PSKG++SPS A +E
Sbjct: 72 ARRG--RSPPPPPSKGASSPSKKAVQE 96
Score = 28.7 bits (61), Expect = 3.4
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = +2
Query: 410 SESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAPQSRVSLRGVPDSPSKGSASPSGVAR 589
S SRS + S + S RS RSLS +P VS G P +G SP+G AR
Sbjct: 16 SSSRSSSRSRSGSSPSRSISRSRSRSRSLSSSSSPSRSVS-SGSRSPPRRGK-SPAGPAR 73
>At2g41550.1 68415.m05135 expressed protein
Length = 475
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = +2
Query: 353 RTSESAEKVGLSGGRVRKVS-ESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAPQSRVS 529
++S + + + G +R + E+R + T L H+ +++ + P + S
Sbjct: 216 KSSSAISRESIGGSTLRPLHLETREKANTTDEDGDILKDHQQNDSLQDIVTVSEPFTTES 275
Query: 530 LRGVPDSPSKGSASPSGVAREEKFHSRLVEK 622
L + D P KG P G R +K H V K
Sbjct: 276 LLEMCDEPDKGRDIPCG-ERSKKSHPEAVVK 305
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 29.9 bits (64), Expect = 1.5
Identities = 27/67 (40%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Frame = +2
Query: 332 YNSQRSRRTSESAEKV-----GLSGGRVRKVSESRSEGPTLSPRA-VGLSPHRSAPAMRS 493
Y S RSR S S + S GR R S SRS + SPR + SP RS RS
Sbjct: 198 YESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRS--LSRS 255
Query: 494 LSYCRAP 514
+S R+P
Sbjct: 256 ISKSRSP 262
>At4g31620.1 68417.m04492 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 from
[Brassica oleracea var. botrytis] GI:3170424,
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 492
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -1
Query: 381 PTFSADSEVRRDRCELYMSQSFLTTGIINAISAAATVTLEFERF*GNNVNCMTKNCS 211
P++ + S+ RR E YM+ ++ N + T TLEF R G M K CS
Sbjct: 330 PSYVSSSKQRR---EFYMAHGWIRFCEANKLKTGETFTLEFVR--GEGTTPMLKFCS 381
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 28.7 bits (61), Expect = 3.4
Identities = 23/88 (26%), Positives = 32/88 (36%)
Frame = +2
Query: 335 NSQRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAP 514
NS+R R+ + R+ SRS P R R +PA R+P
Sbjct: 256 NSRRRSRSRSVRRSLSPRRRRIHSPFRSRSRSPIRRHRRPTHEGRRQSPAPSRRR--RSP 313
Query: 515 QSRVSLRGVPDSPSKGSASPSGVAREEK 598
R P P++ SPS AR +
Sbjct: 314 SPPARRRRSPSPPARRRRSPSPPARRHR 341
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.7 bits (61), Expect = 3.4
Identities = 29/80 (36%), Positives = 32/80 (40%)
Frame = +2
Query: 344 RSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAPQSR 523
RSR S S S R S SRS GP S RS RS S R+P
Sbjct: 226 RSRSRSRSRSPKAKSSRRSPAKSTSRSPGPR--------SKSRSPSPRRSRSRSRSPLPS 277
Query: 524 VSLRGVPDSPSKGSASPSGV 583
V G SPSK S + S +
Sbjct: 278 VQKEG-SKSPSKPSPAKSPI 296
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.7 bits (61), Expect = 3.4
Identities = 29/80 (36%), Positives = 32/80 (40%)
Frame = +2
Query: 344 RSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAPQSR 523
RSR S S S R S SRS GP S RS RS S R+P
Sbjct: 226 RSRSRSRSRSPKAKSSRRSPAKSTSRSPGPR--------SKSRSPSPRRSRSRSRSPLPS 277
Query: 524 VSLRGVPDSPSKGSASPSGV 583
V G SPSK S + S +
Sbjct: 278 VQKEG-SKSPSKPSPAKSPI 296
>At5g45573.1 68418.m05598 hypothetical protein
Length = 195
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 533 RGVPDSPSKGSASPSGVAREEKFHSRLVEKL 625
RG+P S SA PS VAR+ +LV L
Sbjct: 99 RGIPPVSSSSSARPSQVARQLALPKKLVSSL 129
>At4g29440.1 68417.m04203 expressed protein contains Pfam profile:
PF03398 eukaryotic protein of unknown function, DUF292
Length = 1090
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 347 SRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSY 502
SRRT + L ++ KVS P LSP A L+ + + + SLSY
Sbjct: 857 SRRTKGQERRPSLVTAKIDKVSFDEESPPKLSPEAKPLTKQQGSAS--SLSY 906
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 28.3 bits (60), Expect = 4.5
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Frame = +2
Query: 317 NDWDIYNSQRSRRTSESAEKVGLSGGRVRKVSESRS-----EGPT------LSPRAVG-L 460
+D Y S + G SGGR R S SRS + PT SPRA
Sbjct: 94 SDLKCYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSPTYGGRRSYSPRARSPP 153
Query: 461 SPHRSAPAMRSLSYCRAPQSRVSLRGVPDSPSKG 562
P R +P+ R +Y R+P + VP + G
Sbjct: 154 PPRRRSPSPRGRNYSRSPPPYRARDEVPYANGNG 187
>At2g06020.1 68415.m00658 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 301
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +2
Query: 308 VVKNDWDIYNSQRSRRTSESAEKVGLSGG 394
+++++ + YN + + T E+AEKVG+ G
Sbjct: 40 ILQSNKETYNEKLEKNTKENAEKVGIEEG 68
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 28.3 bits (60), Expect = 4.5
Identities = 28/109 (25%), Positives = 43/109 (39%)
Frame = +2
Query: 299 MMPVVKNDWDIYNSQRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSA 478
++ + D + S R R E + + + KV + S+G L LS S
Sbjct: 631 LLTAIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVM-ANSDGLRLLHTVENLSSESSK 689
Query: 479 PAMRSLSYCRAPQSRVSLRGVPDSPSKGSASPSGVAREEKFHSRLVEKL 625
PA+ S+ P S VS+ G+ + S+ V EE V KL
Sbjct: 690 PAINSIPMVERPASVVSIPGM-NGDSRNMVDVKPVITEESNDKSKVWKL 737
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 28.3 bits (60), Expect = 4.5
Identities = 28/109 (25%), Positives = 43/109 (39%)
Frame = +2
Query: 299 MMPVVKNDWDIYNSQRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSA 478
++ + D + S R R E + + + KV + S+G L LS S
Sbjct: 631 LLTAIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVM-ANSDGLRLLHTVENLSSESSK 689
Query: 479 PAMRSLSYCRAPQSRVSLRGVPDSPSKGSASPSGVAREEKFHSRLVEKL 625
PA+ S+ P S VS+ G+ + S+ V EE V KL
Sbjct: 690 PAINSIPMVERPASVVSIPGM-NGDSRNMVDVKPVITEESNDKSKVWKL 737
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 27.9 bits (59), Expect = 6.0
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Frame = +2
Query: 344 RSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAPQSR 523
R R S SA R R +ESRS +LS SP S+P S + +P R
Sbjct: 181 RRRTRSRSASPDEKRRVRGRYDNESRSHSRSLSASPARRSPRSSSPQKTSPAREVSPDKR 240
Query: 524 VSLRG-------VPDSPSKGSASPS 577
+ R P SP+ ASPS
Sbjct: 241 SNERSPSPRRSLSPRSPALQKASPS 265
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 27.9 bits (59), Expect = 6.0
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Frame = +2
Query: 344 RSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSYCRAPQSR 523
R R S SA R R +ESRS +LS SP S+P S + +P R
Sbjct: 181 RRRTRSRSASPDEKRRVRGRYDNESRSHSRSLSASPARRSPRSSSPQKTSPAREVSPDKR 240
Query: 524 VSLRG-------VPDSPSKGSASPS 577
+ R P SP+ ASPS
Sbjct: 241 SNERSPSPRRSLSPRSPALQKASPS 265
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 27.9 bits (59), Expect = 6.0
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +2
Query: 239 LFP*KRSNSRVTVAAAEMAFMMPVVKNDWDIYNSQRSRRTSESAEKVGLSGGRVRKVSES 418
L P + NS V V E A + +ND + Q+ +S E++GL +R +++
Sbjct: 6 LKPVEDVNSEV-VDEVEKAEEVEEQRNDREQEEEQKEEEAPKSFEELGLDSRLIRALTKK 64
Query: 419 RSEGPTL 439
E PTL
Sbjct: 65 GIEKPTL 71
>At3g50810.1 68416.m05564 integral membrane protein, putative
contains 4 transmembrane domains; contains Pfam PF04535
: Domain of unknown function (DUF588); similar to
putative ethylene responsive element binding protein
(GI:22135858) [Arabidopsis thaliana]
Length = 235
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -1
Query: 300 INAISAAATVTLE--FERF*GNNVNCMTKNCSSITENSTPIDNPCLK 166
I+A S+A ++E F G+ ++ + +N S +TE S ID P +K
Sbjct: 174 IDAASSALFCSMECKFRSVLGSQLDELMENSSEVTEISEEIDEPVMK 220
>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]
Length = 1354
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/19 (63%), Positives = 17/19 (89%), Gaps = 1/19 (5%)
Frame = -1
Query: 582 TPD-GLAEPLLGLSGTPRS 529
+PD GLA+P+LG+SG+ RS
Sbjct: 933 SPDSGLADPILGVSGSERS 951
>At3g08850.1 68416.m01029 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies, 1 weak)
Length = 1344
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/19 (68%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
Frame = -1
Query: 582 TPD-GLAEPLLGLSGTPRS 529
+PD GLA+PLLG SG+ RS
Sbjct: 941 SPDSGLADPLLGASGSERS 959
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,235,960
Number of Sequences: 28952
Number of extensions: 228818
Number of successful extensions: 795
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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