Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L16
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    29   0.33 
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    29   0.58 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    28   1.0  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    25   5.4  
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    25   7.1  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.4  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   9.4  
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...    25   9.4  
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    25   9.4  

>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 327 TNCTACINNQNRTIVSSEAFHLTSGVHLVTGDG 229
           T CTA +N  + TI+S++ F  ++   LVTG G
Sbjct: 124 TRCTASMNGHDGTIISAQ-FSPSTSSRLVTGSG 155


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 131 ITPRVQTAKLRTRLF*KXXXXXXXXNLAQTAATPSPVTRWTPLVK 265
           ITP V+T  L T              + +T  TP+ VT  TP+V+
Sbjct: 255 ITPTVETTTLPTAAMTTPVEETTTTPMVETMITPTVVTTTTPMVE 299


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1036

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 324  NCTACINNQNRTIVSSEAFHLTSGVHLVTGD 232
            N T+  N+ N TIVS+    +T  V + TGD
Sbjct: 924  NTTSIWNSSNSTIVSNVTATITGNVTITTGD 954


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
            Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 133  NSTGTNGEIAHEIILKTHLNSNSE 204
            N     GE+ HE+ LKT L  NS+
Sbjct: 968  NGMRLTGEVRHELGLKTPLRPNSQ 991


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 438 AASLLPQ-FLIVELGETPYQGLEYIFLRCEYPLFIINH 328
           + ++LPQ F++   GET      Y+F  C Y    I H
Sbjct: 128 SVAILPQLFMLQRSGETESLTAHYLFAMCLYRGLYIPH 165


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 388 VSGARIHISPVRVPPLHYK 332
           + G +IH++P  V PLH +
Sbjct: 61  IDGHKIHVNPNAVEPLHLR 79


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 112 KYNMAQNNSTGTNGEIAHEIILKTHLNSNSEKF 210
           KY++A N+      E+A+   +  +L S+S KF
Sbjct: 631 KYSLAANHKVPAASEVAYVSAIVENLESHSLKF 663


>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 214 ANGSDAIACDKMDAASQMKCFGRNDRTVLVIY 309
           +NGS A+ CD +D +S +   G +  T+  IY
Sbjct: 124 SNGSYAVTCDPIDGSSNIDA-GVSVGTIFGIY 154


>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 144 YKRRNCARDYFENAFEFEFGEIWRK 218
           +KR NC   + EN    +  ++WR+
Sbjct: 231 FKRENCVEVFVENVLTKKRRKLWRR 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,506
Number of Sequences: 5004
Number of extensions: 43963
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)