Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L16
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0922 + 20834195-20836603                                         31   0.58 
04_03_0198 - 12555866-12556382,12556584-12556822                       29   2.4  
03_06_0008 - 30978448-30978593,30978673-30978733,30978822-309790...    28   5.4  
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070...    27   7.2  

>04_03_0922 + 20834195-20836603
          Length = 802

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 109 KKYNMAQNNSTGTNGEIAHEIILKTHLNSN-SEKFGANGSDAI 234
           K+YN   NN  G +G +A   I   H   N SEK G  G  ++
Sbjct: 476 KRYNCTSNNVEGESGIVAFRYIDLQHATKNFSEKLGEGGFGSV 518


>04_03_0198 - 12555866-12556382,12556584-12556822
          Length = 251

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -1

Query: 448 NPDRCIVASTVPDR--GVGGNAVSGARIHISPVRVPPLHYKP 329
           NP    ++S    R  GV G  +S AR+  SP  + PLH  P
Sbjct: 67  NPFNIALSSAFSTRFPGVNGLDISAARVDFSPGGIVPLHSHP 108


>03_06_0008 -
           30978448-30978593,30978673-30978733,30978822-30979007,
           30979458-30980422,30980716-30980842
          Length = 494

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 181 THLNSNSEKFGANGSDAIACDKMDAASQMKCFGRND 288
           ++LNSN    G  G   +  + +  A  ++C+ RN+
Sbjct: 437 SYLNSNDNSLGPGGDLRVYLENLTVAEDVECYVRNN 472


>02_05_0877 + 32403363-32404662,32406545-32406630,32406709-32407077,
            32407174-32407257,32407362-32407784,32408368-32408434,
            32409238-32409430,32409577-32409680,32409787-32409990,
            32410174-32410427,32410511-32410735,32410812-32411033,
            32411109-32411162,32411337-32411402,32411496-32411633,
            32411979-32412032,32412334-32412393,32412975-32413340,
            32413415-32413582
          Length = 1478

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 306  NNQNRTIVSSEAFHLTSGVHLVTGDG--VAAVCAKFLRIRIQMRFQNNLVR 160
            N  N ++V  +  H TSG    T DG  + A CA++L     +R Q++ V+
Sbjct: 1143 NGTNLSLVQCDLCHGTSGAFRKTADGQWIHAFCAEWLLETEYVRGQDSPVK 1193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,206,195
Number of Sequences: 37544
Number of extensions: 268741
Number of successful extensions: 735
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)