Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L16
         (535 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14638| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.78 
SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)              28   4.2  
SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)            28   4.2  
SB_25374| Best HMM Match : DUF1087 (HMM E-Value=3.2)                   28   5.5  
SB_26480| Best HMM Match : EGF (HMM E-Value=0)                         27   7.3  
SB_32997| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_14638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 258

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
 Frame = +1

Query: 295 VLVIYTGGTIGMVYNEEGVLAPEKYVFEPLIRRFPQLHDQELW-----KQRCSDPDFDQS 459
           VLV+YTGGTIGM   + G   P+    +  I+R P L+D++       +Q+      +  
Sbjct: 8   VLVLYTGGTIGMEKTQSG-YQPKTGFLQKQIKRLPMLYDEDFMATRKNQQQTQSESLELE 66

Query: 460 FLILPKTNDLNVRIXYKIYEY 522
            L +P  +  NVR+ Y I EY
Sbjct: 67  ELAMP-VSPYNVRVLYYIKEY 86


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 399  PTPRSGTVEATMQRSGFRSVLLNFTKD 479
            PTP  G  +  M  SGF   L+NF KD
Sbjct: 3819 PTPSWGEAQKLMSSSGFLQALMNFQKD 3845


>SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)
          Length = 2489

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/63 (23%), Positives = 27/63 (42%)
 Frame = +1

Query: 169 IILKTHLNSNSEKFGANGSDAIACDKMDAASQMKCFGRNDRTVLVIYTGGTIGMVYNEEG 348
           ++   ++ S     G+ G+D+ +  K DA   M  FG+ +        G    MVY  + 
Sbjct: 203 VVQSVNMQSAETDSGSYGADSASNKKRDALQIMALFGKRNEQTSTTSRGQASEMVYGRDK 262

Query: 349 VLA 357
           + A
Sbjct: 263 MQA 265


>SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)
          Length = 277

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 222 AVCAKFLRIRIQMRFQNNLVRNFAVCTRGVILCHIVFFL 106
           A+C   + I      Q ++   F++  RGVILC ++FFL
Sbjct: 28  AICMLGVLIGTIGDVQRHISTGFSIPNRGVILCLMLFFL 66


>SB_25374| Best HMM Match : DUF1087 (HMM E-Value=3.2)
          Length = 144

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 112 KYNMAQNNSTGTNGEIAHEIILKTHLNSNSEKFGANGSDA 231
           K     +NS  +N + ++   LK+  NSNSEK  +N SD+
Sbjct: 32  KLKSDNSNSDNSNSDNSNSDKLKSD-NSNSEKLNSNNSDS 70


>SB_26480| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1772

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +2

Query: 269  NASEETIVRFWLFIQAVQLVWFIMKRGYSH---RRNMYSSP*YGVSPNSTIRNCGSNDAA 439
            N  + TIVR  + +   + + F  +  YS    R  +Y  P   V+PN    +C SN   
Sbjct: 1593 NTDQNTIVRHEVSVFRARYIRFRPQAWYSRVCLRAEVYGCPDRLVAPNVNSNDCSSNPCR 1652

Query: 440  IR 445
             R
Sbjct: 1653 SR 1654


>SB_32997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 553

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +1

Query: 118 NMAQNNSTGTNGEIAHEIILKTHLNSNSEKFGANGSDAIACDKMDAASQMKC 273
           NMA      +NG+I  +   KTH  ++  K+  +       D  D   Q KC
Sbjct: 381 NMANLKKKPSNGKIYLKTTYKTHCAADESKYAEHYRRFSLSDHADTDLQSKC 432


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,680,180
Number of Sequences: 59808
Number of extensions: 314124
Number of successful extensions: 776
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)