Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L16
         (535 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09880.1 68414.m01112 hypothetical protein                          29   1.9  
At1g05700.1 68414.m00591 leucine-rich repeat protein kinase, put...    28   4.5  
At2g23460.1 68415.m02801 extra-large guanine nucleotide binding ...    27   7.9  
At1g78500.1 68414.m09150 pentacyclic triterpene synthase, putati...    27   7.9  
At1g09340.1 68414.m01045 expressed protein                             27   7.9  

>At1g09880.1 68414.m01112 hypothetical protein
          Length = 631

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 417 FLIVELGETPYQGLEYIFLRCEYP 346
           +L   L  +P+QGL Y ++R EYP
Sbjct: 599 YLTQALATSPFQGLMYDYIRLEYP 622


>At1g05700.1 68414.m00591 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase, gi|2129635; contains leucine rich repeat (LRR)
           domains, Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 843

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -2

Query: 384 QGLEYIFLRCEYPLFIINHTNCTACINNQNRTIVS----SEAFHLTSGVHLVT 238
           QGLEY+   C+ P+   +       +N +NR  ++    S +FH  S  H+ T
Sbjct: 667 QGLEYLHCGCKPPIVHRDVKTSNILLNEKNRAKLADFGLSRSFHTESRSHVST 719


>At2g23460.1 68415.m02801 extra-large guanine nucleotide binding
           protein / G-protein (XLG) identical to extra-large
           G-protein (XLG) [Arabidopsis thaliana] GI:3201680
          Length = 888

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = +2

Query: 392 VSPNSTIRNCGSNDAAI---RISISPS 463
           VSP S I NCGSN   +    I++SP+
Sbjct: 71  VSPTSVIANCGSNQLELVSDSITVSPT 97


>At1g78500.1 68414.m09150 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase (04C11)
           [gi:6650208] [PMID:11247608]; similar to beta-Amyrin
           Synthase GI:3688600 from [Panax ginseng]
          Length = 767

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = +1

Query: 322 IGMVYNEEGVLAPEKYVFEPLIRRFPQLHDQELWKQ---RCSDPD--FDQSFL 465
           +  +Y ++ V  P   + +     +PQ +D+ LW Q   +C+  D  + QSFL
Sbjct: 270 VSYLYGKKFVATPTPLILQLREELYPQPYDKILWSQARNQCAKEDLYYPQSFL 322


>At1g09340.1 68414.m01045 expressed protein
          Length = 378

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 318 TACINNQNRTIVSSEAFHLTSGVHLVTGDGVAAVCAK 208
           TA +N       S E F++ SG   VT DG+A  CAK
Sbjct: 255 TAFLNVLGNEKASREIFNI-SGEKYVTFDGLAKACAK 290


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,920,235
Number of Sequences: 28952
Number of extensions: 223385
Number of successful extensions: 644
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)