Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L15
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407...    29   4.1  
04_04_0056 + 22406872-22407258,22408405-22409310                       28   5.5  
08_01_0019 - 146078-146761                                             28   7.2  
06_01_0665 - 4855870-4855956,4856407-4856482,4856794-4856910,485...    28   7.2  

>03_02_0897 -
           12239375-12239458,12240035-12240116,12240213-12240714,
           12241150-12241303,12241458-12241629,12242237-12242443,
           12242926-12243323
          Length = 532

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 515 KRKSDNTCLCAHA*YKAWEKASQPEAALALVAPVCNQY 402
           KR +D+  LC H    +WEK +    AL      CN+Y
Sbjct: 347 KRSADDFPLCVHL--VSWEKENVSSEALEAARIACNKY 382


>04_04_0056 + 22406872-22407258,22408405-22409310
          Length = 430

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = +1

Query: 394 APEYWLHTGATRAKAASGCDAFSQALYYACAHKHVLSLFRFMDYQTTTMLKKFIRFLKIS 573
           A E W   G  RA +A+     ++ L  A  +KH L +  +M     + L +    ++I 
Sbjct: 95  ALERW--AGEGRAASAAELRGIARDLSRAGRYKHALEVAEWMKTHHESDLSENDYGMRID 152

Query: 574 LLTRV---NRTHFFFNKL 618
           L+TRV   N    FF KL
Sbjct: 153 LITRVFGANAAEDFFEKL 170


>08_01_0019 - 146078-146761
          Length = 227

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -2

Query: 255 ESVGAQSD-ASLYVSLRSLG--VP*NLPPVCATHPAL*VKTPLITTTTV 118
           E VG   D A +Y   + L   VP +LPPV   HP L V +P ++   V
Sbjct: 96  ERVGIYYDRADVYAEYKGLRITVPTSLPPVYQGHPDLTVWSPFLSGNNV 144


>06_01_0665 -
           4855870-4855956,4856407-4856482,4856794-4856910,
           4857062-4857127,4858578-4858670,4858788-4858909,
           4859810-4860365,4860485-4860628,4860698-4860831,
           4861003-4861100,4861172-4861353,4861464-4861540,
           4862083-4862305,4862580-4862745,4862836-4863040,
           4864981-4865199
          Length = 854

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +1

Query: 124 GCCDQGRLYL*CRVCSADGWKVLGDAERPERHIQRCITLGANTLK 258
           GCC    + L    C AD W  L D+ +     ++   LG NT K
Sbjct: 40  GCCPCRVVVLPPDFCCADAWCALLDSGKDGASFEKFYILGTNTDK 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,228,197
Number of Sequences: 37544
Number of extensions: 341351
Number of successful extensions: 824
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)