Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L15
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43751| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_58292| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_2270| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.6  
SB_2703| Best HMM Match : PMP22_Claudin (HMM E-Value=2.5)              28   7.4  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   9.8  
SB_6548| Best HMM Match : Helicase_C (HMM E-Value=0.003)               27   9.8  
SB_4355| Best HMM Match : DUF1421 (HMM E-Value=6.6)                    27   9.8  

>SB_43751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 571 SLLTRVNRTHFFFNKLNTNQLL 636
           S  TR++R HFFF  L+T +LL
Sbjct: 187 SFSTRIDRRHFFFRFLHTKELL 208


>SB_58292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 183 PPVCATHPAL*VKTPLITTTTVFCI 109
           PP+  T P L   TPL+ TTT F +
Sbjct: 83  PPLVTTTPPLVTTTPLLVTTTPFLV 107


>SB_2270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 169 YTPCTIGKDAPDHNNHGVLYRFFKVSLLPRVI 74
           Y P  +G+ A  H    VL RF  V LLPR++
Sbjct: 277 YPPVFLGELAVPHGEAKVLERFTFVRLLPRIL 308


>SB_2703| Best HMM Match : PMP22_Claudin (HMM E-Value=2.5)
          Length = 281

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 514 NEKATIRVCARMRSTKLGKRHHNQRRL 434
           N++ +   CA  +S KLG R H QR++
Sbjct: 247 NKRLSSVTCAFDKSNKLGNRRHGQRKM 273


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 166 CSADGWKVLGDAERPERHIQRCITLGA 246
           C    W+ + +  RPE+H+ RC  LG+
Sbjct: 483 CQQKYWEAVSNP-RPEQHVPRCTNLGS 508


>SB_6548| Best HMM Match : Helicase_C (HMM E-Value=0.003)
          Length = 1063

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 228 MHHSGRQHSQRPCA*VMADTERGNSQNCFPTSKIASEFSFENITE 362
           + H  R  SQRPC  ++ D++  +     P+S+  S    E++ E
Sbjct: 635 LRHKRRSISQRPCPDIVDDSDDESETTSRPSSRQQSMSETESVHE 679


>SB_4355| Best HMM Match : DUF1421 (HMM E-Value=6.6)
          Length = 642

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 228 MHHSGRQHSQRPCA*VMADTERGNSQNCFPTSKIASEFSFENITE 362
           + H  R  SQRPC  ++ D++  +     P+S+  S    E++ E
Sbjct: 490 LRHKRRSISQRPCPDIVDDSDDESETTSRPSSRQQSMSETESVHE 534


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,214,049
Number of Sequences: 59808
Number of extensions: 405543
Number of successful extensions: 1054
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)