Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L14
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133...    30   1.5  
03_06_0604 - 35006004-35008580                                         29   2.7  
04_04_0415 + 25038826-25038835,25039333-25039964,25040484-250405...    29   3.6  
10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845...    29   4.7  
12_02_0808 - 23347167-23347205,23347361-23347439,23348555-233487...    28   6.2  
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975...    28   8.3  

>10_06_0085 +
           10511258-10512327,10512978-10513058,10513318-10513396,
           10514160-10514201
          Length = 423

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 412 PETFSVCCGPPPEINPEDMTLNERCSRAVTA 504
           P ++   C   PE+   D  L  R SRA+TA
Sbjct: 30  PGSYEAACSADPELGTFDTALRRRASRAITA 60


>03_06_0604 - 35006004-35008580
          Length = 858

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +1

Query: 232 CGYENNIPMVCCPISN-ACKTPDDKPGIC---VGLYNCE-HITYMMLDKTR 369
           CGY    P+  CP  N     P D  G C   + L NC  + T + LD T+
Sbjct: 291 CGYNGTSPVCRCPSENFQLSNPADPRGGCRRKIELQNCPGNSTMLQLDNTQ 341


>04_04_0415 +
           25038826-25038835,25039333-25039964,25040484-25040561,
           25040588-25040833,25041598-25041684,25041860-25042024
          Length = 405

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +1

Query: 121 RNESGNCVSLYDCEPLLNLFRNKSRTAEDKKLLGDSQCGYENNIPMVCCPISNACKTPDD 300
           R  +GN  S Y CE +L LFR         +++G   C     +P         C  PDD
Sbjct: 145 RELAGNGASAYLCEDVLGLFRKFHYFVRPSRIVGVGTCA----LPEAWIVGVGTCVLPDD 200


>10_06_0143 - 11183574-11183761,11183989-11184344,11184437-11184592,
            11184825-11184994,11185906-11186064,11186856-11187164,
            11187281-11187576,11187825-11188174,11188279-11188434,
            11188634-11188803,11189289-11189447,11190702-11191010,
            11191172-11191458,11191911-11192263,11192366-11192521,
            11192680-11192849,11195800-11195958,11196937-11197254,
            11197658-11197786
          Length = 1449

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
 Frame = -1

Query: 653  PHSSFI*SKLSYSITTSHGYWVIFVSFPPTILLTTVSSTPQHSLLLSSG----KAVTAL- 489
            P+ SF+ +K + S+T  +G    + +  P++ +  +   PQ    + +G    KA   L 
Sbjct: 1101 PNGSFLQAKTANSVTADYGESTNWGNDDPSVFIVDMVGGPQGEYQICNGYGAEKASQVLR 1160

Query: 488  EHLSLRVISSG--FISGGG 438
            EH S  ++ S   FIS  G
Sbjct: 1161 EHWSTYIVESDFEFISSSG 1179


>12_02_0808 -
           23347167-23347205,23347361-23347439,23348555-23348718,
           23348838-23349056
          Length = 166

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +1

Query: 28  INSNKMIIFSTVSYILLISVNLIRAQTCTTPRNESGNCVSLYDCEPLLNLFRNKSRTAED 207
           + S + ++  T  Y+L I+ NL+   +C+     + NC  L  C P    F  K      
Sbjct: 103 MGSRRALVLGTSGYLLFIAANLV--PSCSEHALPTANC-RLPSCRPEAAAFCTKKMRHLT 159

Query: 208 KKL 216
           KK+
Sbjct: 160 KKI 162


>03_02_0602 +
           9759055-9759223,9759305-9759455,9759548-9759593,
           9759974-9760033,9760519-9760555,9761268-9761347,
           9761413-9761516,9761613-9761673,9762962-9763019,
           9763866-9763918,9764357-9765320,9766131-9766185,
           9767223-9768786
          Length = 1133

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -1

Query: 581 VSFPPTILLTTVSSTPQHSLLLSSGKAVTALEHLSLRVISSGFISGGGPQHTLNVSGPLQ 402
           V+ P +I   TVS       +  +  AV A + +  +  + G  S G P H  N+SGPL 
Sbjct: 577 VAEPQSIPAPTVSVRTTGGHVRGNVAAVKAAQIVPTQC-TDGLRSFGSPHHFTNLSGPLT 635

Query: 401 T 399
           T
Sbjct: 636 T 636


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,592,353
Number of Sequences: 37544
Number of extensions: 380905
Number of successful extensions: 876
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)