Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L13
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    77   3e-15
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch...    75   1e-14
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    29   0.44 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.4  
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe...    25   7.1  

>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 39/89 (43%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
 Frame = +2

Query: 8   DAQLVSGGVGAQTRQVLENLKHVVEAGGGSLESVIKTTILLANMDDFQCVNQIYAEYFPK 187
           + +++ G VG QTRQ L NL+ V+   G SL  ++K  I LA+MDDF  VN++Y E  P 
Sbjct: 73  NGKVIEGTVGDQTRQCLLNLQEVLTEAGSSLNKIVKVNIFLADMDDFAAVNKVYTEVLPD 132

Query: 188 NCPARATYQVTKLPLN---AAVEIEAIAL 265
             PAR+   V  +PL+     +EIE IAL
Sbjct: 133 PKPARSCVAVKTVPLSTQGVKIEIECIAL 161


>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
 Frame = +2

Query: 5   RDAQLVSGGVGAQTRQVLENLKHVVEAGGGSLESVIKTTILLANMDDFQCVNQIYAEYFP 184
           +D   V G +  QTR  +ENL  V+   G SLE ++K  I L ++DDF  +N++Y E  P
Sbjct: 36  KDGNFVPGTIQEQTRLTIENLAEVLRVAGSSLEKLVKVNIFLTDIDDFAAMNEVYKEMLP 95

Query: 185 KNCPARATYQVTKLPLNA---AVEIEAIA 262
              PAR T    K+PL++    +EIE IA
Sbjct: 96  DPMPARTTVAAGKIPLSSKGGKIEIECIA 124


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 20  VSGGVGAQTRQVLENLK-HVVEAGGGSLESVIKTTILLANMDDFQCV 157
           ++GG+  Q +Q L N   HVV A  G L SVI    L  N    +C+
Sbjct: 226 ITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCL 272


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = +1

Query: 373  KNIHYYEFLL*TFSDLV*NIGFGSXXXXXXXXXXXXXXXXEIVAPF 510
            +N+H  EF   TF DL+ N+ +G                  ++A F
Sbjct: 4089 RNVHLEEFSWGTFKDLLLNVVYGPKVSASSDFIALDKILKRLIAQF 4134


>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 135 IWTIFNALIKFMLNIFLKIALHGL 206
           IW  F AL+  M+ +FL   +HGL
Sbjct: 77  IWYPF-ALLALMVGVFLSFVMHGL 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,160
Number of Sequences: 5004
Number of extensions: 47795
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)