Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L13
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0593 + 19808148-19808310,19809416-19809531,19810129-198102...    93   1e-19
02_05_0218 + 26860319-26862448                                         30   1.8  
12_01_0112 - 860330-861946                                             29   2.4  
02_01_0716 + 5348720-5349115                                           28   5.6  
07_01_0698 - 5269329-5269579,5270673-5270928,5271158-5271725,527...    28   7.4  
07_03_0636 + 20168180-20168462,20168961-20170303,20170401-201706...    27   9.7  
02_02_0497 + 10961079-10963824,10964182-10964282,10964759-109648...    27   9.7  

>07_03_0593 +
           19808148-19808310,19809416-19809531,19810129-19810202,
           19810286-19810335,19810498-19810592
          Length = 165

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 44/81 (54%), Positives = 61/81 (75%)
 Frame = +2

Query: 20  VSGGVGAQTRQVLENLKHVVEAGGGSLESVIKTTILLANMDDFQCVNQIYAEYFPKNCPA 199
           VSG +G    +V++N+  +++A G S  SV+KTTI+LA++ DF+ VN+IYA+YFP   PA
Sbjct: 84  VSGVLGLNP-EVMKNMGEILKASGASYSSVVKTTIMLADLQDFKKVNEIYAKYFPAPAPA 142

Query: 200 RATYQVTKLPLNAAVEIEAIA 262
           R+TYQV  LPLNA +EIE IA
Sbjct: 143 RSTYQVAALPLNARIEIECIA 163


>02_05_0218 + 26860319-26862448
          Length = 709

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
 Frame = +2

Query: 29  GVGAQTRQVLENLKHVVEAGGGSLESVIKTTILLANMDDFQCVNQIYAEYFPK-NCPARA 205
           GVG Q    L+ L H   AGG +L  ++K T  ++          +  +   +     R 
Sbjct: 465 GVGGQWASFLQELAHRRGAGGMAL-PLLKLTAFMSTASHHPLELHLTQDNLSQFAAELRI 523

Query: 206 TYQVTKLPLNAAVEIEAIALSGDLVITEAGPCPCA 310
            ++   + L+A    E I+ SGD V+  + P  C+
Sbjct: 524 PFEFNAVSLDAFNPAELISSSGDEVVAVSLPVGCS 558


>12_01_0112 - 860330-861946
          Length = 538

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +2

Query: 2   DRDAQLVSGGVGAQTRQVLENLKHVVEAGGGSLESVIKT 118
           +RD+   SGG   ++R+   +    ++ GGG++++V KT
Sbjct: 285 ERDSAASSGGANGRSRRASLSGAGALQGGGGAMQTVAKT 323


>02_01_0716 + 5348720-5349115
          Length = 131

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 90  PPASTTCFKFSKTWRVCAPTPPDTNCASRS 1
           PP S T    S TW    PTPP  + A+ S
Sbjct: 39  PPRSKTATAASLTWTSMVPTPPPLSGAASS 68


>07_01_0698 -
           5269329-5269579,5270673-5270928,5271158-5271725,
           5271757-5272763
          Length = 693

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 11  AQLVSGGVGAQTRQVLENLKHVVEAGGGS 97
           AQ V GG G + + +  N    VEAGGGS
Sbjct: 75  AQAVVGGGGEKAKDLNNNAAPRVEAGGGS 103


>07_03_0636 +
           20168180-20168462,20168961-20170303,20170401-20170678,
           20170790-20170821,20170908-20171314,20171401-20171847
          Length = 929

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 429 YWFWFLVTMILCKLAFIIFWL*NCCAF 509
           +W  +L+    C LA +IF+L  CC +
Sbjct: 836 FWGLYLICGFSCVLALLIFFLRICCQY 862


>02_02_0497 +
           10961079-10963824,10964182-10964282,10964759-10964800,
           10966918-10966986
          Length = 985

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 267 LRAIASISTAAFRGSLVTWYVARAGQFLGKY 175
           +RA+ SI  ++  G +VTW    AG  + +Y
Sbjct: 354 MRAVESIFRSSKMGDIVTWNTVIAGYVMNRY 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,245,850
Number of Sequences: 37544
Number of extensions: 286749
Number of successful extensions: 584
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)