Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L13
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48410| Best HMM Match : Lig_chan (HMM E-Value=3.5e-05)              30   1.9  
SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                28   7.5  
SB_48408| Best HMM Match : Lig_chan (HMM E-Value=0.19)                 27   9.9  
SB_36053| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_48410| Best HMM Match : Lig_chan (HMM E-Value=3.5e-05)
          Length = 1084

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -1

Query: 394 IHNNEYF*NLNMYDSFQNTLQNINILSA 311
           I ++EYF   N+  SF NT  NINI+SA
Sbjct: 24  ILSDEYFPAQNISSSFPNTQVNINIISA 51


>SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 1145

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 294 PASVMTRSPLRAIASISTAAFRGSLV 217
           P +++  SP+  + SI+ AA RGSL+
Sbjct: 734 PCALVMTSPIAVVCSITAAARRGSLI 759


>SB_48408| Best HMM Match : Lig_chan (HMM E-Value=0.19)
          Length = 705

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 394 IHNNEYF*NLNMYDSFQNTLQNINILSA 311
           I + EYF   N+   F NT  NINI+SA
Sbjct: 24  ILSEEYFPAQNILSIFPNTKVNINIISA 51


>SB_36053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 138 WTIFNALIKFMLNIFLKIALHGL 206
           WT+ NA+   +L   L +ALHGL
Sbjct: 8   WTVLNAVAGLVLPSVLVVALHGL 30


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,821,507
Number of Sequences: 59808
Number of extensions: 334078
Number of successful extensions: 593
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)