Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L13
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20390.1 68416.m02583 endoribonuclease L-PSP family protein c...    98   4e-21
At4g35890.1 68417.m05097 La domain-containing protein contains P...    29   3.5  
At4g18150.1 68417.m02697 hypothetical protein                          29   3.5  
At5g52480.1 68418.m06511 leucine-rich repeat protein, N7-related...    28   6.1  
At2g40113.1 68415.m04932 hypothetical protein                          27   8.1  

>At3g20390.1 68416.m02583 endoribonuclease L-PSP family protein
           contains Pfam domain PF01042: Endoribonuclease L-PSP
          Length = 187

 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 46/83 (55%), Positives = 61/83 (73%)
 Frame = +2

Query: 14  QLVSGGVGAQTRQVLENLKHVVEAGGGSLESVIKTTILLANMDDFQCVNQIYAEYFPKNC 193
           + VS  V  QT QVL+N+  +++A G    SV+KTTI+LA++ DF+ VN+IYA+YFP   
Sbjct: 103 KFVSESVEDQTEQVLKNMGEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFPAPS 162

Query: 194 PARATYQVTKLPLNAAVEIEAIA 262
           PAR+TYQV  LPLNA +EIE IA
Sbjct: 163 PARSTYQVAALPLNAKIEIECIA 185


>At4g35890.1 68417.m05097 La domain-containing protein contains Pfam
           PF05383: La domain
          Length = 523

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 297 GPASVMTRSPLRAIASISTAAFRGSLVT 214
           GP+S  +R+P+  IAS+S AA   +++T
Sbjct: 64  GPSSPQSRAPIEPIASVSVAAPTAAVLT 91


>At4g18150.1 68417.m02697 hypothetical protein 
          Length = 762

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/51 (29%), Positives = 31/51 (60%)
 Frame = +2

Query: 23  SGGVGAQTRQVLENLKHVVEAGGGSLESVIKTTILLANMDDFQCVNQIYAE 175
           +GGV A +R+V+++LK +VE      E  I   ++  +M+  + VN++ ++
Sbjct: 12  NGGVPASSRKVIQDLKEIVECS----ELEIYAMLVECDMNPDEAVNRLLSQ 58


>At5g52480.1 68418.m06511 leucine-rich repeat protein, N7-related
           contains PF00560: Leucine Rich Repeat; similar to F-box
           protein Fbl2 (GI:6164721) [Homo sapiens]
          Length = 241

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 215 VTKLPLNAAVEIEAIALSGDLVITEAGPCPCART*YINIL 334
           V KLP+   +E+  I+LSG+ +      CP  +T  +N L
Sbjct: 73  VVKLPMLEELEVSGISLSGESMKLAGLSCPNLKTLMLNRL 112


>At2g40113.1 68415.m04932 hypothetical protein
          Length = 144

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 95  IHLPPQLHASSFLKLGASVLPLHQIPTAHH 6
           IHLP  LHA   L+    V P+H +P  +H
Sbjct: 66  IHLPSHLHAIPQLEKACFVKPIH-VPKHYH 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,485,519
Number of Sequences: 28952
Number of extensions: 237185
Number of successful extensions: 494
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)