Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L12
         (192 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0597 - 18859601-18859818,18860914-18861083,18861250-188613...    28   0.91 
09_03_0044 - 11855569-11855664,11855775-11855891,11856572-118566...    27   1.6  
03_06_0008 - 30978448-30978593,30978673-30978733,30978822-309790...    26   4.9  
03_06_0006 + 30963331-30963457,30963751-30964715,30965166-309653...    26   4.9  
06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070...    25   6.4  
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807...    25   6.4  
01_06_1446 - 37409074-37409783,37409896-37409986,37410645-374119...    25   8.5  

>09_04_0597 -
           18859601-18859818,18860914-18861083,18861250-18861303,
           18862759-18863284,18864465-18864663,18866787-18866852,
           18866999-18867300,18867394-18867634,18867716-18867973,
           18868076-18868207
          Length = 721

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +1

Query: 1   VRFTIKFTXMNPDETTSKEDNKKQRAFNNPNSRMPNIKVFT 123
           V F  +      DE         Q++ NNPN  MP+I  FT
Sbjct: 446 VLFNPETVAKGQDELGENHSPSLQKSANNPNRGMPSIGAFT 486


>09_03_0044 -
           11855569-11855664,11855775-11855891,11856572-11856682,
           11856768-11856874,11857182-11857221,11857328-11857408,
           11857578-11857631,11857800-11857860,11857984-11858029,
           11858276-11858352,11858448-11858563,11858654-11858890
          Length = 380

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +2

Query: 83  TIQIQECRTSKCLQGALIRRLRXKLLQGS 169
           T +I +CR+ KC Q  +IR ++ K+ +GS
Sbjct: 233 TARIWDCRSGKCTQ--VIRPVKNKIFEGS 259


>03_06_0008 -
           30978448-30978593,30978673-30978733,30978822-30979007,
           30979458-30980422,30980716-30980842
          Length = 494

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 34  PDETTSKEDNKKQRAFN 84
           PD +TSK +N K+RAF+
Sbjct: 57  PDISTSKSENYKERAFS 73


>03_06_0006 +
           30963331-30963457,30963751-30964715,30965166-30965351,
           30965440-30965500,30965580-30965623
          Length = 460

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 34  PDETTSKEDNKKQRAFN 84
           PD +TSK +N K+RAF+
Sbjct: 57  PDISTSKSENYKERAFS 73


>06_03_0763 -
           24405525-24405701,24406209-24406368,24406924-24407005,
           24407098-24407167,24407443-24407607,24407731-24407874,
           24408467-24408715,24409006-24409221,24409306-24409398
          Length = 451

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +1

Query: 91  NSRMPNIKVFTGSSHPEIAXKIVARLGID 177
           + R   +K+F+G+++  +A +I + LG+D
Sbjct: 84  DGRDSRLKIFSGTANRPLAQEIASYLGVD 112


>04_01_0617 -
           8076624-8076971,8077761-8077883,8077965-8078035,
           8078108-8078360,8078613-8078768,8078854-8079770,
           8079858-8079927,8082310-8082416,8082722-8082755,
           8083621-8083940,8084031-8084820,8084890-8085046,
           8085647-8086068
          Length = 1255

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 49  SKEDNKKQRAFNNPNSRMPNIKVFTGSSHP 138
           S+  N       +PNS + N+KV T SS P
Sbjct: 744 SETQNPMHTIPEHPNSSLGNVKVCTASSGP 773


>01_06_1446 -
           37409074-37409783,37409896-37409986,37410645-37411988,
           37412062-37412709,37412801-37412852,37413141-37413214,
           37414370-37414419,37414488-37414569,37414779-37414828,
           37414907-37414949,37415030-37415110,37415198-37415243,
           37415336-37415382,37415467-37415532,37415612-37415678,
           37415761-37415858
          Length = 1182

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 41  KPQAKKIIKNKGLLTIQIQECRTSKCLQGALIRRLR 148
           K + KK +  K  L  Q + CR S   + ALI RL+
Sbjct: 28  KTEKKKYVLKKIRLARQTERCRKSAHQEMALIARLQ 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,021,145
Number of Sequences: 37544
Number of extensions: 54245
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 14,793,348
effective HSP length: 43
effective length of database: 13,178,956
effective search space used: 263579120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)