Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L12
         (192 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31174| Best HMM Match : LIM_bind (HMM E-Value=0)                    26   5.5  
SB_45116| Best HMM Match : EGF (HMM E-Value=0)                         25   9.7  
SB_42947| Best HMM Match : 7tm_1 (HMM E-Value=0.00011)                 25   9.7  
SB_32969| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.7  

>SB_31174| Best HMM Match : LIM_bind (HMM E-Value=0)
          Length = 609

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 28  MNPDETTSKEDNKKQRAFNNPNSRMPNIKVFTGSSH 135
           MNP ET      +K+++ + PN+  P     +G+SH
Sbjct: 534 MNPRETPRPRTRRKRKSSSTPNASTP---TSSGNSH 566


>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2023

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 53   KKIIKNKGLLTIQIQECRTSKCLQGA 130
            +K + ++G L   I EC ++ CL GA
Sbjct: 1282 EKGVADQGNLIADIDECSSNPCLNGA 1307


>SB_42947| Best HMM Match : 7tm_1 (HMM E-Value=0.00011)
          Length = 380

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 171 SEPC--NNFXRNLRMRAPCKHFDVRHS*IWIVKSPL 70
           +EPC  NN   NLR RAP +  D   S + I+ S L
Sbjct: 142 NEPCRMNNTSLNLRSRAPPESRDELFSVVLIIISIL 177


>SB_32969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 90

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/12 (66%), Positives = 12/12 (100%)
 Frame = -1

Query: 93 IWIVKSPLFFII 58
          +W+V++PLFFII
Sbjct: 64 VWMVQAPLFFII 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,874,125
Number of Sequences: 59808
Number of extensions: 67489
Number of successful extensions: 189
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 16,821,457
effective HSP length: 42
effective length of database: 14,309,521
effective search space used: 300499941
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)