Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_L12
(192 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00036-6|AAK29853.1| 377|Caenorhabditis elegans Hypothetical pr... 41 1e-04
U00036-5|AAT92064.1| 446|Caenorhabditis elegans Hypothetical pr... 41 1e-04
U00036-7|AAK29858.2| 319|Caenorhabditis elegans Hypothetical pr... 39 4e-04
U00036-8|AAL06052.1| 318|Caenorhabditis elegans Hypothetical pr... 28 0.80
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical... 28 1.1
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical... 28 1.1
AF000197-4|AAB52899.1| 274|Caenorhabditis elegans Hypothetical ... 27 1.4
Z70680-4|CAA94569.1| 274|Caenorhabditis elegans Hypothetical pr... 27 1.8
AC006617-4|AAF39771.1| 291|Caenorhabditis elegans Hypothetical ... 27 1.8
Z92829-10|CAB07350.2| 319|Caenorhabditis elegans Hypothetical p... 26 3.2
U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical p... 26 3.2
U41106-2|AAA82410.1| 797|Caenorhabditis elegans Hypothetical pr... 26 4.3
Z68014-5|CAA92027.1| 353|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z66495-9|CAH19100.1| 670|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z66495-8|CAA91274.1| 680|Caenorhabditis elegans Hypothetical pr... 25 7.4
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 25 7.4
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 25 7.4
U39472-4|AAK31389.2| 319|Caenorhabditis elegans Helix loop heli... 25 9.8
U39472-3|AAN39683.1| 320|Caenorhabditis elegans Helix loop heli... 25 9.8
U39472-2|AAN39684.1| 324|Caenorhabditis elegans Helix loop heli... 25 9.8
M59940-2|AAA16290.1| 320|Caenorhabditis elegans CeMyoD, alterna... 25 9.8
M59940-1|AAA16289.1| 324|Caenorhabditis elegans CeMyoD protein. 25 9.8
AF106577-12|AAC78182.1| 106|Caenorhabditis elegans Hypothetical... 25 9.8
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne... 25 9.8
>U00036-6|AAK29853.1| 377|Caenorhabditis elegans Hypothetical
protein R151.2a protein.
Length = 377
Score = 41.1 bits (92), Expect = 1e-04
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = +1
Query: 97 RMPNIKVFTGSSHPEIAXKIVARLGID 177
RMPNIKVF+GSSHP+++ +I RL ++
Sbjct: 58 RMPNIKVFSGSSHPDLSTRICERLQLE 84
>U00036-5|AAT92064.1| 446|Caenorhabditis elegans Hypothetical
protein R151.2d protein.
Length = 446
Score = 41.1 bits (92), Expect = 1e-04
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = +1
Query: 97 RMPNIKVFTGSSHPEIAXKIVARLGID 177
RMPNIKVF+GSSHP+++ +I RL ++
Sbjct: 127 RMPNIKVFSGSSHPDLSTRICERLQLE 153
>U00036-7|AAK29858.2| 319|Caenorhabditis elegans Hypothetical
protein R151.2b protein.
Length = 319
Score = 39.1 bits (87), Expect = 4e-04
Identities = 15/26 (57%), Positives = 22/26 (84%)
Frame = +1
Query: 100 MPNIKVFTGSSHPEIAXKIVARLGID 177
MPNIKVF+GSSHP+++ +I RL ++
Sbjct: 1 MPNIKVFSGSSHPDLSTRICERLQLE 26
>U00036-8|AAL06052.1| 318|Caenorhabditis elegans Hypothetical
protein R151.2c protein.
Length = 318
Score = 28.3 bits (60), Expect = 0.80
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +1
Query: 115 VFTGSSHPEIAXKIVARLGID 177
VF+GSSHP+++ +I RL ++
Sbjct: 5 VFSGSSHPDLSTRICERLQLE 25
>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
protein Y43F8B.3b protein.
Length = 1398
Score = 27.9 bits (59), Expect = 1.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 183 PRVNSEPCNNFXRN 142
PR+N +PCN F RN
Sbjct: 1109 PRINQDPCNAFVRN 1122
>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
protein Y43F8B.3a protein.
Length = 1816
Score = 27.9 bits (59), Expect = 1.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 183 PRVNSEPCNNFXRN 142
PR+N +PCN F RN
Sbjct: 1527 PRINQDPCNAFVRN 1540
>AF000197-4|AAB52899.1| 274|Caenorhabditis elegans Hypothetical
protein T21G5.4 protein.
Length = 274
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 174 NSEPCNNFXRNLRMRAPCKHFDV 106
N + CN+F R LR APC V
Sbjct: 55 NCKDCNDFFRALRFAAPCAKITV 77
>Z70680-4|CAA94569.1| 274|Caenorhabditis elegans Hypothetical
protein C25G4.6 protein.
Length = 274
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 174 NSEPCNNFXRNLRMRAPC 121
N + CN+F R LR APC
Sbjct: 55 NCKDCNDFFRALRFAAPC 72
>AC006617-4|AAF39771.1| 291|Caenorhabditis elegans Hypothetical
protein C39B5.7 protein.
Length = 291
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 40 ETTSKEDNKKQRAFNNPNSRMPNIKVFTGSSHPEIAXKIV 159
ET +EDN + AFN+ S + N+K F ++ ++ + +
Sbjct: 77 ETKIEEDNFMRAAFNDLASVLKNVKKFVFQNYSKVKQQAI 116
>Z92829-10|CAB07350.2| 319|Caenorhabditis elegans Hypothetical
protein F10A3.15 protein.
Length = 319
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -1
Query: 153 FXRNLRMRAPCKH--FDVRHS*IWIVKSPLFFIIFFACGF 40
F R L +++P F ++ + IW++ + F+I+F C F
Sbjct: 114 FYRYLSVKSPSNLSIFSLKAAPIWVISLSVNFVIWFFCFF 153
>U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical
protein C44B7.2b protein.
Length = 339
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 10 TIKFTXMNPDETTSKEDNKKQRAFNNPNSRMP 105
T+K PD + +K QR F P++R P
Sbjct: 191 TLKVEFAKPDRVRVQRQDKDQRDFTLPDNRRP 222
>U41106-2|AAA82410.1| 797|Caenorhabditis elegans Hypothetical
protein W06A11.2 protein.
Length = 797
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 85 NPNSRMPNIKVFTGSSHPEI 144
N NSR P K+FTG+ P +
Sbjct: 22 NGNSRCPVFKIFTGTGIPAV 41
>Z68014-5|CAA92027.1| 353|Caenorhabditis elegans Hypothetical
protein W04G3.5 protein.
Length = 353
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 115 VFTGSSHPEIAXKIVARLGI 174
+ TG+SHPE+A + RL I
Sbjct: 13 LLTGNSHPELAKMVSERLEI 32
>Z66495-9|CAH19100.1| 670|Caenorhabditis elegans Hypothetical
protein C36A4.9b protein.
Length = 670
Score = 25.0 bits (52), Expect = 7.4
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +2
Query: 47 QAKKIIKNK-GLLTIQ--IQECR-TSKCLQGALIRRLRXKLLQGSELTLG 184
+ KK+++ K G L + IQE K G + RR+ K+ +GSE +G
Sbjct: 599 ELKKLVREKIGALAVPDVIQEAPGLPKTRSGKVTRRILRKIAEGSESGIG 648
>Z66495-8|CAA91274.1| 680|Caenorhabditis elegans Hypothetical
protein C36A4.9a protein.
Length = 680
Score = 25.0 bits (52), Expect = 7.4
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +2
Query: 47 QAKKIIKNK-GLLTIQ--IQECR-TSKCLQGALIRRLRXKLLQGSELTLG 184
+ KK+++ K G L + IQE K G + RR+ K+ +GSE +G
Sbjct: 609 ELKKLVREKIGALAVPDVIQEAPGLPKTRSGKVTRRILRKIAEGSESGIG 658
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 28 MNPDETTSKEDNKKQRAFNNPNSRMPNIKVFTGSSH 135
MNP + N + RA + R N+K GS H
Sbjct: 115 MNPRFLVGRSLNSRSRAVTRGSKRTSNVKENEGSIH 150
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 28 MNPDETTSKEDNKKQRAFNNPNSRMPNIKVFTGSSH 135
MNP + N + RA + R N+K GS H
Sbjct: 115 MNPRFLVGRSLNSRSRAVTRGSKRTSNVKENEGSIH 150
>U39472-4|AAK31389.2| 319|Caenorhabditis elegans Helix loop helix
protein 1, isoformc protein.
Length = 319
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 67 KQRAFNNPNSRMPNIKV 117
KQR NPN R+P +++
Sbjct: 179 KQRTCPNPNQRLPKVEI 195
>U39472-3|AAN39683.1| 320|Caenorhabditis elegans Helix loop helix
protein 1, isoforma protein.
Length = 320
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 67 KQRAFNNPNSRMPNIKV 117
KQR NPN R+P +++
Sbjct: 175 KQRTCPNPNQRLPKVEI 191
>U39472-2|AAN39684.1| 324|Caenorhabditis elegans Helix loop helix
protein 1, isoformb protein.
Length = 324
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 67 KQRAFNNPNSRMPNIKV 117
KQR NPN R+P +++
Sbjct: 179 KQRTCPNPNQRLPKVEI 195
>M59940-2|AAA16290.1| 320|Caenorhabditis elegans CeMyoD,
alternatively spliced productprotein.
Length = 320
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 67 KQRAFNNPNSRMPNIKV 117
KQR NPN R+P +++
Sbjct: 175 KQRTCPNPNQRLPKVEI 191
>M59940-1|AAA16289.1| 324|Caenorhabditis elegans CeMyoD protein.
Length = 324
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 67 KQRAFNNPNSRMPNIKV 117
KQR NPN R+P +++
Sbjct: 179 KQRTCPNPNQRLPKVEI 195
>AF106577-12|AAC78182.1| 106|Caenorhabditis elegans Hypothetical
protein F46F5.6 protein.
Length = 106
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 37 DETTSKEDNKKQRAFNNPNSRMPNIKVFTGSSHPEIA 147
D+T + ED + A +N N+ PN+ + S+ E A
Sbjct: 25 DDTDASEDTAESPAPDNANTVAPNVGAASTSTAKESA 61
>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
neurexin-like protein 1 protein.
Length = 1655
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 79 FNNPNSRMPNIKVFTGSSHPEIAXKIVARLGI 174
F NS++P + F SS PEI K + L +
Sbjct: 1227 FIEQNSKIPQLLKFAFSSSPEIVLKDKSMLAL 1258
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,640,867
Number of Sequences: 27780
Number of extensions: 54053
Number of successful extensions: 210
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 12,740,198
effective HSP length: 43
effective length of database: 11,545,658
effective search space used: 230913160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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