Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_L12
(192 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g41810.1 68418.m05090 expressed protein 29 0.43
At2g35390.2 68415.m04339 ribose-phosphate pyrophosphokinase 1 / ... 29 0.57
At2g35390.1 68415.m04338 ribose-phosphate pyrophosphokinase 1 / ... 29 0.57
At3g57300.1 68416.m06378 transcriptional activator, putative sim... 26 3.0
At3g47610.1 68416.m05183 expressed protein 26 3.0
At3g56980.1 68416.m06342 basic helix-loop-helix (bHLH) family pr... 25 7.0
At3g18340.1 68416.m02333 F-box family protein contains F-box dom... 25 7.0
At1g06110.1 68414.m00640 F-box family protein contains similarit... 25 7.0
At5g52580.1 68418.m06529 hypothetical protein 25 9.2
At5g52280.1 68418.m06488 protein transport protein-related low s... 25 9.2
At4g13730.2 68417.m02131 RabGAP/TBC domain-containing protein lo... 25 9.2
At4g13730.1 68417.m02132 RabGAP/TBC domain-containing protein lo... 25 9.2
At2g45160.1 68415.m05622 scarecrow transcription factor family p... 25 9.2
At2g44530.1 68415.m05539 ribose-phosphate pyrophosphokinase, put... 25 9.2
>At5g41810.1 68418.m05090 expressed protein
Length = 288
Score = 29.1 bits (62), Expect = 0.43
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +1
Query: 16 KFTXMNPDETTSKEDNKKQRAFNNPNSRMPNIKVFTGSSH 135
KFT N +E T KE+ KK+ NN S M + K SSH
Sbjct: 86 KFTSQN-EENTKKEEEKKKETNNNNLSNMKHKKT---SSH 121
>At2g35390.2 68415.m04339 ribose-phosphate pyrophosphokinase 1 /
phosphoribosyl diphosphate synthetase 1 (PRSI) identical
to phosphoribosyl diphosphate synthetase 1
(ribose-phosphate pyrophosphokinase 1 (PRS I)
[Arabidopsis thaliana] GI:633140, SP|Q42581
Length = 403
Score = 28.7 bits (61), Expect = 0.57
Identities = 12/41 (29%), Positives = 27/41 (65%)
Frame = +1
Query: 55 EDNKKQRAFNNPNSRMPNIKVFTGSSHPEIAXKIVARLGID 177
E + +++ N N+R+ K+F+G+++P +A +I +G+D
Sbjct: 78 ESARMEKSVNRTNTRL---KLFSGTANPALAQEIAWYMGLD 115
>At2g35390.1 68415.m04338 ribose-phosphate pyrophosphokinase 1 /
phosphoribosyl diphosphate synthetase 1 (PRSI) identical
to phosphoribosyl diphosphate synthetase 1
(ribose-phosphate pyrophosphokinase 1 (PRS I)
[Arabidopsis thaliana] GI:633140, SP|Q42581
Length = 352
Score = 28.7 bits (61), Expect = 0.57
Identities = 12/41 (29%), Positives = 27/41 (65%)
Frame = +1
Query: 55 EDNKKQRAFNNPNSRMPNIKVFTGSSHPEIAXKIVARLGID 177
E + +++ N N+R+ K+F+G+++P +A +I +G+D
Sbjct: 27 ESARMEKSVNRTNTRL---KLFSGTANPALAQEIAWYMGLD 64
>At3g57300.1 68416.m06378 transcriptional activator, putative similar
to transcriptional activator SRCAP [Homo sapiens]
GI:5106572; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1507
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 52 KEDNKKQRAFNNPNSRMP 105
K NKK+RA +NP +R P
Sbjct: 1438 KSSNKKRRAASNPKARAP 1455
>At3g47610.1 68416.m05183 expressed protein
Length = 408
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 22 TXMNPDETTSKEDNKKQR 75
T P+ TT+K+DNKK R
Sbjct: 339 TEKKPNSTTTKKDNKKNR 356
>At3g56980.1 68416.m06342 basic helix-loop-helix (bHLH) family
protein
Length = 258
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 47 QAKKIIKNKGLLTIQIQECRTSKC 118
Q KK+IK K L +QI R ++C
Sbjct: 131 QVKKLIKKKEELLVQISGQRNTEC 154
>At3g18340.1 68416.m02333 F-box family protein contains F-box domain
Pfam:PF00646
Length = 361
Score = 25.0 bits (52), Expect = 7.0
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -1
Query: 141 LRMRAPCKHFDVRHS*IWIVKSPLFF 64
+R+R+ CKH++ ++ W +K L F
Sbjct: 24 VRLRSVCKHWNDLYNDKWFIKKSLGF 49
>At1g06110.1 68414.m00640 F-box family protein contains similarity
to F-box protein FBX3 GI:6103643 from [Homo sapiens] ;
similar to SKP1 interacting partner 2 (SKIP2)
TIGR_Ath1:At5g67250
Length = 436
Score = 25.0 bits (52), Expect = 7.0
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 44 PQAKKIIKNKGLLTIQIQECRTSKCLQGALIRRLRXKLLQGSELT 178
P+AK ++ KG+ +QE TS ++ L RL + + G EL+
Sbjct: 105 PEAKATLR-KGVTEDDLQEFETSLKVKLPLPTRLLYRFVDGQELS 148
>At5g52580.1 68418.m06529 hypothetical protein
Length = 327
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 180 RVNSEPCNNFXRNLRMRAPCKHFDVRHS 97
R N++P +++ L A KH ++RHS
Sbjct: 248 RWNNQPVHSYPEKLSNIAEEKHHEIRHS 275
>At5g52280.1 68418.m06488 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 853
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 13 IKFTXMNPDETTSKEDNKKQRAFNN 87
+KF N D+T SKED+ K N+
Sbjct: 144 LKFIEENKDQTLSKEDSFKSLQSND 168
>At4g13730.2 68417.m02131 RabGAP/TBC domain-containing protein low
similarity to SP|Q08484 GTPase-activating protein GYP1
{Saccharomyces cerevisiae}; contains Pfam profile
PF00566: TBC domain
Length = 408
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 28 MNPDETTSKEDNKKQRAFNNPNSRMP 105
MNP E T K D K N+P P
Sbjct: 170 MNPSEVTRKMDKSKGGDSNDPKIESP 195
>At4g13730.1 68417.m02132 RabGAP/TBC domain-containing protein low
similarity to SP|Q08484 GTPase-activating protein GYP1
{Saccharomyces cerevisiae}; contains Pfam profile
PF00566: TBC domain
Length = 449
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 28 MNPDETTSKEDNKKQRAFNNPNSRMP 105
MNP E T K D K N+P P
Sbjct: 170 MNPSEVTRKMDKSKGGDSNDPKIESP 195
>At2g45160.1 68415.m05622 scarecrow transcription factor family
protein
Length = 640
Score = 24.6 bits (51), Expect = 9.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 90 WIVKSPLFFIIFFACGF 40
WI +SP + I+F CGF
Sbjct: 573 WIERSPPWRILFTQCGF 589
>At2g44530.1 68415.m05539 ribose-phosphate pyrophosphokinase,
putative / phosphoribosyl diphosphate synthetase,
putative very strong similarity to phosphoribosyl
pyrophosphate synthase [Spinacia oleracea] GI:4902849;
contains Pfam profile PF00156: Phosphoribosyl
transferase domain
Length = 394
Score = 24.6 bits (51), Expect = 9.2
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = +1
Query: 109 IKVFTGSSHPEIAXKIVARLGID 177
+++F+G+++P +A +I LG+D
Sbjct: 78 LRIFSGTANPILAQEISCYLGLD 100
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,402,497
Number of Sequences: 28952
Number of extensions: 48344
Number of successful extensions: 153
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 12,070,560
effective HSP length: 43
effective length of database: 10,825,624
effective search space used: 216512480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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