Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L11
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...   102   4e-23
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...   102   4e-23
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    64   2e-11
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    27   3.0  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   3.9  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   5.2  

>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score =  102 bits (245), Expect = 4e-23
 Identities = 47/100 (47%), Positives = 62/100 (62%)
 Frame = -1

Query: 516 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 337
           MK+ +C++SG K+YPG G+  V+ D K F F+N K E+  L R+NPR+++WTVLYRR  K
Sbjct: 1   MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60

Query: 336 KGQEEEXXXXXXXXXXXXXXAIVGASLSDIMAKRNMKPEV 217
           KG  EE               IVGA+L  I  KRN +PEV
Sbjct: 61  KGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score =  102 bits (245), Expect = 4e-23
 Identities = 47/100 (47%), Positives = 62/100 (62%)
 Frame = -1

Query: 516 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 337
           MK+ +C++SG K+YPG G+  V+ D K F F+N K E+  L R+NPR+++WTVLYRR  K
Sbjct: 1   MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60

Query: 336 KGQEEEXXXXXXXXXXXXXXAIVGASLSDIMAKRNMKPEV 217
           KG  EE               IVGA+L  I  KRN +PEV
Sbjct: 61  KGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 27/61 (44%), Positives = 34/61 (55%)
 Frame = -1

Query: 516 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 337
           M++  C +    +YPGHG   V+ D K F F  SKC     M+RNPRKV WT  YR+   
Sbjct: 1   MRVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHG 60

Query: 336 K 334
           K
Sbjct: 61  K 61


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 418 VQECECLAVHLNHGFSMARIDLVATVSAKTDLHFDPRA 531
           +++ +  +V +N     A  DL+AT+S    LH+D  A
Sbjct: 392 IEQLQSYSVLINQAIGDAISDLLATISVLNALHWDASA 429


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
 Frame = +2

Query: 215  LTSGFMLRLAMMSLSEAPTIARWNFCVLLVRFLACSSSWPFLNLRL---YRTVHVTLRGF 385
            +T   +L+++    S AP I       L+V     SS   F N  +   Y    ++L+ F
Sbjct: 1001 MTEELLLQISSKLSSVAPKILNAVLYNLVVSDDQISSQEAFENFEVKMAYTVRQLSLKVF 1060

Query: 386  LLIKWAASHLEFKNVNVLPSTLTMV 460
            LL   + S ++FK  NV   T  +V
Sbjct: 1061 LLFLKSCSDVDFKPYNVFIYTAFVV 1085


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +2

Query: 176 SFAALIACSLCAFLT--SGFMLRLAMMSLSEAPTIARWNFCVLLVRFLACSSSWPFLNL 346
           +F +L+ CS+C FLT   GF + +   ++    T       ++ + + A + + P L L
Sbjct: 329 TFGSLLTCSVCLFLTYVGGFSVHMMKTTMLIGLTATT---LIIFILYFATAQTLPCLAL 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,777
Number of Sequences: 5004
Number of extensions: 42055
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)