Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_L11
(630 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 25 0.80
AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase ... 23 3.2
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 4.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.9
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.9
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.9
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 24.6 bits (51), Expect = 0.80
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3
Query: 279 AGTFVSFLYVSW 314
AGT+ FLY+SW
Sbjct: 244 AGTYAIFLYISW 255
>AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase
protein.
Length = 510
Score = 22.6 bits (46), Expect = 3.2
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1
Query: 354 YRRKFKKGQEEE 319
YRR FKK QEE+
Sbjct: 259 YRRNFKKMQEEK 270
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 4.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 507 GLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCE 406
G C Y + PG K+ K+D F F + +CE
Sbjct: 134 GTCLY----VPPGIFKSTCKIDITWFPFDDQRCE 163
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 179 FAALIACSLCAFLTSGFMLRLAMMSLSEAPTI 274
FAA++ LC + + F + ++ L AP I
Sbjct: 427 FAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 458
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 179 FAALIACSLCAFLTSGFMLRLAMMSLSEAPTI 274
FAA++ LC + + F + ++ L AP I
Sbjct: 427 FAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 458
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 179 FAALIACSLCAFLTSGFMLRLAMMSLSEAPTI 274
FAA++ LC + + F + ++ L AP I
Sbjct: 427 FAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 458
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 179 FAALIACSLCAFLTSGFMLRLAMMSLSEAPTI 274
FAA++ LC + + F + ++ L AP I
Sbjct: 427 FAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 458
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 179 FAALIACSLCAFLTSGFMLRLAMMSLSEAPTI 274
FAA++ LC + + F + ++ L AP I
Sbjct: 427 FAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 458
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 179 FAALIACSLCAFLTSGFMLRLAMMSLSEAPTI 274
FAA++ LC + + F + ++ L AP I
Sbjct: 427 FAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 458
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 9.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 179 FAALIACSLCAFLTSGFMLRLAMMSLSEAPTI 274
FAA++ LC + + F + ++ L AP I
Sbjct: 495 FAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 526
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 9.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 179 FAALIACSLCAFLTSGFMLRLAMMSLSEAPTI 274
FAA++ LC + + F + ++ L AP I
Sbjct: 495 FAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 526
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,439
Number of Sequences: 438
Number of extensions: 3271
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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