Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L11
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S ...    79   2e-15
At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)            79   2e-15
At2g44860.1 68415.m05585 60S ribosomal protein L24, putative           60   1e-09
At1g74770.1 68414.m08663 expressed protein                             28   5.9  

>At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S
           ribosomal protein L24, Arabidopsis thaliana,
           EMBL:AC006282
          Length = 163

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 40/101 (39%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
 Frame = -1

Query: 516 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 337
           +K  LC +SG KIYPG G   ++ D + F FLNSKC+     +  P K+ WT +YR++ K
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHK 62

Query: 336 KGQEEEXXXXXXXXXXX-XXXAIVGASLSDIMAKRNMKPEV 217
           K   +E               +IVGA+L  I  KR  KPEV
Sbjct: 63  KDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEV 103


>At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)
          Length = 164

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 40/101 (39%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
 Frame = -1

Query: 516 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 337
           +K  LC +SG KIYPG G   ++ D + F FLNSKC+     +  P K+ WT +YR++ K
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHK 62

Query: 336 KGQEEEXXXXXXXXXXX-XXXAIVGASLSDIMAKRNMKPEV 217
           K   +E               +IVGA+L  I  KR  KPEV
Sbjct: 63  KDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEV 103


>At2g44860.1 68415.m05585 60S ribosomal protein L24, putative
          Length = 159

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 27/66 (40%), Positives = 35/66 (53%)
 Frame = -1

Query: 516 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 337
           M++  C +    IYPGHG   V+ D K F F  SKC     M+RNPRKV WT  +R    
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 336 KGQEEE 319
           K   ++
Sbjct: 61  KDMTKD 66


>At1g74770.1 68414.m08663 expressed protein
          Length = 985

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 23/87 (26%), Positives = 36/87 (41%)
 Frame = -3

Query: 391 EEKSP*SNMDRSIQT*IQKGPRRRTGQETYKKDTKVPACNCRSFTQ*HHG*T*HEXXXXX 212
           E+ SP  +  R +   ++ G   +T  E + K   V     R   Q  H     E     
Sbjct: 480 EDSSPKKSFPRLLLQWLRFGYSGKTSVERFWKQLDV-MFKVRCSCQKEHT----EEASGS 534

Query: 211 XXKRTGYQSCKRTEEIYQGFKESSSTC 131
              +T  Q CK ++++Y   K+ SSTC
Sbjct: 535 FSNQTQLQLCKVSKDVYPRKKDKSSTC 561


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,542,312
Number of Sequences: 28952
Number of extensions: 229411
Number of successful extensions: 536
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)