Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_L10
(336 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 37 0.001
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 27 0.58
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual 27 1.0
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 27 1.0
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 1.3
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom... 25 2.3
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 3.1
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom... 25 3.1
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 25 4.1
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 24 5.4
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 24 5.4
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 24 5.4
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 24 5.4
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 24 7.1
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar... 24 7.1
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 24 7.1
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 23 9.4
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 23 9.4
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 36.7 bits (81), Expect = 0.001
Identities = 16/57 (28%), Positives = 35/57 (61%)
Frame = +2
Query: 128 QRVKRSWSSSWTLKGTFDSESTVRDNATVFGLSTXISSVQIFHLSDYIEEDELEHLR 298
+R++ WSS W+L GT+ ++ + +N+ + S + S++ F + ++E +EL H +
Sbjct: 1206 RRIRMEWSSIWSLLGTYFTQVSCHENSII--ASFALDSLRQFSM-QFLEIEELSHFK 1259
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 27.5 bits (58), Expect = 0.58
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 207 QPSSACPHXYHLSRFSIYQIILRKMNWSICEVFTDY-VSTGPRE 335
Q S++C + SIY++ L+ NW +C + Y VS P +
Sbjct: 978 QGSASCASTF----LSIYEMALKIKNWDVCTELSSYLVSLDPEK 1017
>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 1.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 95 VMVTAFQGNVAQRVKRSWSSSWTLKGTFDSESTVRDNATVF 217
+++T F GNV S +W L G ++ +++ N+ VF
Sbjct: 280 ILITDFFGNVRDIELHSEKINWMLPGENTTKPSIKRNSFVF 320
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 26.6 bits (56), Expect = 1.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 223 QAEDGCVVSDCRLTVECTLECP 158
+A+ G V+ +C C++ECP
Sbjct: 297 RADTGAVIYECNSFCSCSMECP 318
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.2 bits (55), Expect = 1.3
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -1
Query: 243 TDDXNVDKPKTVALSRTVDSLSNVPLSVHE-EDHDLFTRWATLP*KAVTITAGQLFLSPS 67
+DD N VA T D++SNVPLSV + E + A+ A TA L +PS
Sbjct: 395 SDDTNASTAVPVAF--TNDNVSNVPLSVADNEPNSTLNLLASSDTAAFEPTAVSLHENPS 452
>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 605
Score = 25.4 bits (53), Expect = 2.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 231 NVDKPKTVALSRTVDSLSNVPLSVHEEDHDLFTRWATLP 115
N KP + LS T + ++ PLS+H DL +P
Sbjct: 114 NDGKPNDIELSSTSKTENDPPLSLHTTPDDLQGNGVNVP 152
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 25.0 bits (52), Expect = 3.1
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +3
Query: 165 SRVHSTVSRQSETTQPSSACPHXYHLSRFSIYQIILRKMNWSI 293
S H+ R S T +P S C Y + + I+ N+S+
Sbjct: 1245 SGTHAASPRSSMTVKPLSLCSSGYESIVWDLTSILFDPKNYSL 1287
>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 3.1
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -1
Query: 228 VDKPKTVALSRTVDSLSNVPL--SVHEEDHDLF 136
VD+PK+V+ +V S S VP SV +E +D +
Sbjct: 122 VDRPKSVSSHASVTSSSTVPTIPSVSKEANDKY 154
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 24.6 bits (51), Expect = 4.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 55 LKPFNGSSFAPSQSPSVL 2
LK GS+F+ S+SPSVL
Sbjct: 531 LKSVEGSAFSMSKSPSVL 548
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 24.2 bits (50), Expect = 5.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 128 QRVKRSWSSSWTLKGTF 178
QR++ WSS W + G F
Sbjct: 1206 QRIRVEWSSIWNVLGRF 1222
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -1
Query: 255 WKIWTDDXNVDKPKTVALSRTVDS-LSNVPLSVHEEDHDLFTRWA 124
WK++ + +P + T +S L +P++ H++ D+FT++A
Sbjct: 112 WKLYLQFL-MKQPNVTKIRCTFNSALRALPVTQHDDIWDMFTKYA 155
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 24.2 bits (50), Expect = 5.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 156 HGHSRVHSTVSRQSETTQPSSACP 227
H HS +H VS S PSS P
Sbjct: 60 HMHSSLHEEVSVGSSIASPSSRIP 83
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -3
Query: 142 PFHPLGNVALKGCDHN---SRPVVSLSEPPRHLKPFNGSSFAPSQSPS 8
P +P+G +++ D S +L+ PP ++ F F P + P+
Sbjct: 420 PINPIGASSIQTLDDQVEMSNSNQNLAFPPEMIQQFEAQDFIPGKVPT 467
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 23.8 bits (49), Expect = 7.1
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +1
Query: 73 REKQLACCYGHSLSRQRCPTGEKV 144
+ + CC G L C TGEK+
Sbjct: 19 KHNYIVCCSGPYLLGFSCSTGEKI 42
>SPMIT.03 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial||Partial|Manual
Length = 323
Score = 23.8 bits (49), Expect = 7.1
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Frame = -3
Query: 127 GNVALKGCDHNSRPVVSLSEP----PRHLKPFNGSSF 29
GN+ KG R ++ + P+HLKP N S F
Sbjct: 50 GNLLNKGTSETLRNEITTKKVSIHLPKHLKPANDSQF 86
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 23.8 bits (49), Expect = 7.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 85 LACCYGHSLSRQRCPTGEKVVVLLMD 162
L C GH L C GE+++V D
Sbjct: 243 LFVCLGHYLYANACSKGEQLIVPTWD 268
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 260 SDYIEEDELEHLRGIY 307
S +EE EL HLRG Y
Sbjct: 353 SQNLEEVELTHLRGYY 368
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -2
Query: 179 RMYP*VSMRRTTTFSPVGQRCLERL 105
RMY + ++T F P+G+ CL++L
Sbjct: 167 RMYN-KNTKKTRFFYPLGKNCLQKL 190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,583,613
Number of Sequences: 5004
Number of extensions: 31740
Number of successful extensions: 106
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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