Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_L10
(336 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36970.1 68417.m05239 remorin family protein contains Pfam do... 31 0.25
At2g16470.1 68415.m01887 zinc finger (CCCH-type) family protein ... 29 0.58
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 29 1.0
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 29 1.0
At5g06780.1 68418.m00766 emsy N terminus domain-containing prote... 28 1.3
At2g32490.1 68415.m03970 3'-5' exonuclease domain-containing pro... 27 3.1
At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase cyc... 27 4.1
At1g58050.1 68414.m06579 helicase domain-containing protein cont... 27 4.1
At5g19520.1 68418.m02325 mechanosensitive ion channel domain-con... 26 5.4
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 26 5.4
At3g62710.1 68416.m07044 glycosyl hydrolase family 3 protein exh... 26 5.4
At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol p... 26 5.4
At2g04750.1 68415.m00485 fimbrin-like protein, putative similar ... 26 5.4
At1g22090.1 68414.m02762 expressed protein contains Pfam profile... 26 5.4
At4g16180.1 68417.m02456 expressed protein ; expression supporte... 26 7.2
At4g15050.1 68417.m02311 expressed protein contains Pfam profil... 26 7.2
At3g08750.1 68416.m01017 F-box family protein contains F-box dom... 26 7.2
At1g35730.1 68414.m04441 pumilio/Puf RNA-binding domain-containi... 26 7.2
At5g55790.1 68418.m06953 expressed protein ; expression support... 25 9.5
At4g36440.1 68417.m05176 expressed protein 25 9.5
At1g63940.4 68414.m07242 monodehydroascorbate reductase, putativ... 25 9.5
At1g63940.3 68414.m07239 monodehydroascorbate reductase, putativ... 25 9.5
At1g63940.2 68414.m07240 monodehydroascorbate reductase, putativ... 25 9.5
At1g63940.1 68414.m07241 monodehydroascorbate reductase, putativ... 25 9.5
At1g18270.1 68414.m02280 ketose-bisphosphate aldolase class-II f... 25 9.5
>At4g36970.1 68417.m05239 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 427
Score = 30.7 bits (66), Expect = 0.25
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +3
Query: 33 DEPLKGFKWRGGSERETTGLLLWSQPFKATLPNG*---KGRGPPHGHSRVHSTVSRQSET 203
D P KG G +TG+L + F+ ++ G GRGP HGHSR S V SE
Sbjct: 142 DAPPKGLMVAGSPF--STGVLEADRVFRGSVGGGGCDGYGRGPGHGHSR--SWVDLMSEE 197
Query: 204 TQPSSA 221
T S+
Sbjct: 198 TSSLSS 203
>At2g16470.1 68415.m01887 zinc finger (CCCH-type) family protein /
GYF domain-containing protein contains Pfam domains
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF02213: GYF domain
Length = 659
Score = 29.5 bits (63), Expect = 0.58
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = +3
Query: 12 GDWLGANDEPLKGFKWRGGSERETTGLLLWSQPFKATLP----NG*KGRGPPHGHSRVHS 179
GD+LG++D+ + W ERE L +P ++P + PP R+ S
Sbjct: 113 GDYLGSSDDKVSDSMWTSAREREVQPSLGSEKPRSVSIPETPARSSRAIAPPELSPRIAS 172
Query: 180 TVS 188
+S
Sbjct: 173 EIS 175
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = -1
Query: 219 PKTVALSRTVDSLSNVP-LSVHEEDHD 142
PK V L +VD+L+N+P LSVH+ + D
Sbjct: 256 PKFVHLVESVDNLANLPKLSVHKPEDD 282
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 109 GCDHNSRPVVSLSEPPRHLKPFNGSSFAPSQSPS 8
GC ++RP V + PP P GS +PS SPS
Sbjct: 399 GCGRSTRPPVVVPSPPTTPSP-GGSPPSPSISPS 431
>At5g06780.1 68418.m00766 emsy N terminus domain-containing protein
/ ENT domain-containing protein contains Pfam profile
PF03735: ENT domain
Length = 320
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +3
Query: 3 NTEGDWLGANDEPLKGFKWRGGSERETTGLLL---WSQPFKATLPNG*KGRGPPHGHSRV 173
N +W+ N+ P K +W G + T + ++ + TL +G +GRGP R
Sbjct: 175 NETWEWVDLNEIPTKDIRWDGEEDGVTLNVGHGGGTTRGNRRTLSHGGRGRGPRTQPRRE 234
Query: 174 H 176
H
Sbjct: 235 H 235
>At2g32490.1 68415.m03970 3'-5' exonuclease domain-containing
protein contains Pfam profile PF01612: 3'-5' exonuclease
Length = 217
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 133 GEKVVVLLMDTQGYIRQ*VDSPRQRNRLRLVHIXII 240
GE+++V + T IR+ + S R +RLRL H ++
Sbjct: 32 GERLIVTVTHTPSVIRRWIHSIRFVSRLRLSHPLVV 67
>At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 259
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 79 SLSEPPRHLKPFNGSSF 29
SLS PPR L P N S+F
Sbjct: 13 SLSAPPRRLSPINTSAF 29
>At1g58050.1 68414.m06579 helicase domain-containing protein contains
similarity to SP|P24785 Dosage compensation regulator
(Male-less protein) (No action potential protein)
{Drosophila melanogaster}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 1417
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 240 DDXNVDKPKTVALSRTVDSLSNVPLSVHEEDH 145
D+ NVD+ K LS ++S SN+ + + DH
Sbjct: 1133 DEQNVDRVKLALLSDKLESSSNLNNNDRQSDH 1164
>At5g19520.1 68418.m02325 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 742
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 139 FHPLGNVALKGCDHNSRPVVSLSEPPRHLKPFNGSSFAPSQSPS 8
F+PL + S+PV +S P + F+GS P + PS
Sbjct: 31 FNPLASPDSDAGIEKSKPVPPISIPTPEIYKFSGSVHKPPKIPS 74
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +3
Query: 141 GRGPPHGHSRVHSTVSRQSETTQPSSACPHXY 236
G+ PPHGH H S P PH Y
Sbjct: 23 GQYPPHGHGYGHHGHGYGSSYPYPPPPPPHGY 54
>At3g62710.1 68416.m07044 glycosyl hydrolase family 3 protein
exhydrolase II - Zea mays, EMBL:AF064707
Length = 650
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 119 NVAQRVKRSWSSSWTLKGTFDSESTVRDNATVFGL 223
NVA K T+ G + +TV DNAT+FG+
Sbjct: 234 NVAGCAKHFVGDGGTING-INENNTVADNATLFGI 267
>At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol
protease, putative contains similarity to cysteine
proteinase RD21A (thiol protease) GI:435619, SP:P43297
from [Arabidopsis thaliana]
Length = 452
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 134 VKRSWSSSWTLKGTFDSESTVRDNATVFGLSTXIS 238
V+ SW S+W G F E +++++ G++ S
Sbjct: 308 VRNSWGSNWGESGYFKLERNIKESSGKCGVAMMAS 342
>At2g04750.1 68415.m00485 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 652
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 155 SWTLKGTFDSESTVRDNATVFGLSTXISSV 244
+W+L+ D+ESTV D+ V ++ IS++
Sbjct: 614 NWSLQQQSDTESTVSDDTDVSSVTEEISNL 643
>At1g22090.1 68414.m02762 expressed protein contains Pfam profile
PF04776: Protein of unknown function (DUF626)
Length = 329
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = -2
Query: 329 WPSGHIVCKYLANAPVHLPQYNLIDGKSGQMIXMWTSRRRLRCLGLSTH 183
+P G +V Y A V L +YN+++GK+ Q+ + + R+ C G S++
Sbjct: 47 YPYGSLVKFY---AMVGLHRYNVLEGKNLQLDTLKSFNMRINC-GASSY 91
>At4g16180.1 68417.m02456 expressed protein ; expression supported
by MPSS
Length = 313
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 252 KIWTDDXNVDKPKTVALSRTVDSLSNVPLSVHEEDHDLFT 133
KI T++ +V P+TV R + NV H+ HD+F+
Sbjct: 255 KIETEEGSVS-PRTVPRIRNIVLPGNVSPVGHQSTHDIFS 293
>At4g15050.1 68417.m02311 expressed protein contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 396
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 255 WKIWTDDXNVDKPKTVALSRTVDS 184
W TDD N + K A++RTV S
Sbjct: 144 WNYTTDDSNSNNQKHFAVARTVGS 167
>At3g08750.1 68416.m01017 F-box family protein contains F-box domain
Pfam:PF00646
Length = 369
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +3
Query: 252 SIYQIILRKMNW---SICEVFTDYVSTG 326
+++ +LR++ W S+C + TDYV G
Sbjct: 114 AVWNPVLREIKWIKPSVCYLHTDYVGIG 141
>At1g35730.1 68414.m04441 pumilio/Puf RNA-binding domain-containing
protein
Length = 564
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 49 VSNGVEARREKQLACCYGHSLSRQRCPTGEKVVVLLMDTQ 168
+SN V +RE+ +A +SL + P G VV L+D Q
Sbjct: 419 ISNSVGLQRERLVAEISRNSLHLSQDPFGNYVVQYLIDQQ 458
>At5g55790.1 68418.m06953 expressed protein ; expression supported
by MPSS
Length = 191
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 150 PPHGHSRVHSTVSRQSETTQPSSA 221
PP+ H H T S S T PSS+
Sbjct: 46 PPNDHLYHHGTKSSSSSTKSPSSS 69
>At4g36440.1 68417.m05176 expressed protein
Length = 394
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 199 SDCRLTVECTLECP*GGPRPF 137
S CR+TV+ + C GPR F
Sbjct: 138 STCRVTVDLAIPCEKPGPRVF 158
>At1g63940.4 68414.m07242 monodehydroascorbate reductase, putative
similar to monodehydroascorbate reductase GB:AAD28178
[Brassica juncea]
Length = 482
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 197 GLSTHCRMYP*VSMRRTTTFSPVGQRCLER 108
GLS C P ++ R FSP+G R R
Sbjct: 13 GLSLWCPSSPSLARRFPARFSPIGSRIASR 42
>At1g63940.3 68414.m07239 monodehydroascorbate reductase, putative
similar to monodehydroascorbate reductase GB:AAD28178
[Brassica juncea]
Length = 416
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 197 GLSTHCRMYP*VSMRRTTTFSPVGQRCLER 108
GLS C P ++ R FSP+G R R
Sbjct: 13 GLSLWCPSSPSLARRFPARFSPIGSRIASR 42
>At1g63940.2 68414.m07240 monodehydroascorbate reductase, putative
similar to monodehydroascorbate reductase GB:AAD28178
[Brassica juncea]
Length = 493
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 197 GLSTHCRMYP*VSMRRTTTFSPVGQRCLER 108
GLS C P ++ R FSP+G R R
Sbjct: 20 GLSLWCPSSPSLARRFPARFSPIGSRIASR 49
>At1g63940.1 68414.m07241 monodehydroascorbate reductase, putative
similar to monodehydroascorbate reductase GB:AAD28178
[Brassica juncea]
Length = 486
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 197 GLSTHCRMYP*VSMRRTTTFSPVGQRCLER 108
GLS C P ++ R FSP+G R R
Sbjct: 13 GLSLWCPSSPSLARRFPARFSPIGSRIASR 42
>At1g18270.1 68414.m02280 ketose-bisphosphate aldolase class-II family
protein low similarity to KbaY (tagatose-1,6-bisphosphate
aldolase) [Escherichia coli] GI:8895753; contains Pfam
profile PF01116: Fructose-bisphosphate aldolase class-II
Length = 1373
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Frame = +2
Query: 62 WRLGERNNWPAVMVTAFQGNVAQ-----RVKRSWS 151
W+LG + P V F GNV V +SWS
Sbjct: 1057 WKLGPESRHPGVPYIVFPGNVGNSTALAEVVKSWS 1091
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,551,265
Number of Sequences: 28952
Number of extensions: 179269
Number of successful extensions: 532
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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