Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L09
         (171 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636...    28   1.2  
12_02_0123 - 13930138-13932471                                         27   2.1  

>12_01_1092 -
           11362094-11362367,11362739-11362795,11363256-11363683,
           11364350-11365462
          Length = 623

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 150 TWLSNFKMNSCFCLMSIDTKLTSSFSGRAE 61
           +WLSN + ++CFC   I  +  SS S   +
Sbjct: 106 SWLSNIEFSNCFCSAIIGKQTGSSTSAEEQ 135


>12_02_0123 - 13930138-13932471
          Length = 777

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 7   RLQDEGCCVTGFRSGRYCLGSS 72
           R++D GC   GF+ GR  +G S
Sbjct: 135 RMEDSGCVAGGFKVGRTTVGHS 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,208,375
Number of Sequences: 37544
Number of extensions: 53868
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 14,793,348
effective HSP length: 36
effective length of database: 13,441,764
effective search space used: 268835280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)