Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L09
         (171 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   7.2  
SB_51085| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)                25   9.5  

>SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1562

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 7   RLQDEGCCVTGFRSGRYCLGSS*K 78
           R+   GCC T    GR C+ S  K
Sbjct: 228 RVSYRGCCGTAIERGRCCIASEKK 251


>SB_51085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1251

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 144 LSNFKMNSCFCLMSIDTKLTSSFSGRAEAIAARP 43
           + NF+  S  CL  ++ K+ + F G      A P
Sbjct: 18  IGNFERKSSVCLEKVEAKIRNLFEGHCHLHEAWP 51


>SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)
          Length = 518

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 171 LYITGSVTWLSNFKMNSCFCLMSIDTKLTSSF 76
           LY+ G  TW ++FK   C  L   D K+   F
Sbjct: 112 LYVPGYGTWKTSFKSIECPKLAGQDGKIQFRF 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,933,182
Number of Sequences: 59808
Number of extensions: 63362
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 16,821,457
effective HSP length: 36
effective length of database: 14,668,369
effective search space used: 293367380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)