Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L09
         (171 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81055-6|CAB02890.3|  287|Caenorhabditis elegans Hypothetical pr...    27   1.3  
AF190910-1|AAF03892.1|  287|Caenorhabditis elegans Smad protein ...    27   1.3  
AC025722-2|AAK68508.1|  605|Caenorhabditis elegans Hypothetical ...    26   4.1  
U97014-1|AAB52425.1|  893|Caenorhabditis elegans Hypothetical pr...    25   9.5  
CU457740-11|CAM36341.1|  353|Caenorhabditis elegans Hypothetical...    25   9.5  
CU457740-5|CAM36335.1|  361|Caenorhabditis elegans Hypothetical ...    25   9.5  

>Z81055-6|CAB02890.3|  287|Caenorhabditis elegans Hypothetical
           protein F01G10.8 protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -1

Query: 147 WLSNFKMNSCFCLMSIDTKLTSS---FSGRAEAIAARPKTSNTAALILQPTG 1
           WL +  M  C+ + S  T   +    FS  +   + +PKT   A + ++PTG
Sbjct: 22  WLEDAPMPDCYNVPSTSTDENNDPFPFSNISSQSSLKPKTPEKAVVEVRPTG 73


>AF190910-1|AAF03892.1|  287|Caenorhabditis elegans Smad protein
           protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -1

Query: 147 WLSNFKMNSCFCLMSIDTKLTSS---FSGRAEAIAARPKTSNTAALILQPTG 1
           WL +  M  C+ + S  T   +    FS  +   + +PKT   A + ++PTG
Sbjct: 22  WLEDAPMPDCYNVPSTSTDENNDPFPFSNISSQSSLKPKTPEKAVVEVRPTG 73


>AC025722-2|AAK68508.1|  605|Caenorhabditis elegans Hypothetical
           protein Y50D4C.3 protein.
          Length = 605

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 80  HFQDEPRQ*RPDLKPVTQQPSSCSR 6
           +F+D  RQ RP    V QQP   SR
Sbjct: 395 YFRDRDRQQRPSTGSVGQQPREVSR 419


>U97014-1|AAB52425.1|  893|Caenorhabditis elegans Hypothetical
           protein T05E8.1 protein.
          Length = 893

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 138 NFKMNSCFCLMSIDTKLTSSFS 73
           N K  +CFC MS+  K+   F+
Sbjct: 406 NLKWYNCFCSMSLVNKIDPQFA 427


>CU457740-11|CAM36341.1|  353|Caenorhabditis elegans Hypothetical
           protein C50E10.11 protein.
          Length = 353

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -1

Query: 171 LYITGSVTWLSNFKMNSCFCLMSIDTKLTS 82
           L++ G+ TW     +N+C   +SI+ +  +
Sbjct: 125 LFMGGAFTWYYMILLNTCLLFISIERRFAT 154


>CU457740-5|CAM36335.1|  361|Caenorhabditis elegans Hypothetical
           protein C50E10.5 protein.
          Length = 361

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 171 LYITGSVTWLSNFKMNSCFCLMSIDTKLTSSF 76
           L++ G +TW   F + +CF ++ ++    S F
Sbjct: 125 LFLGGFLTWHYMFVLITCFYILGLERTFASWF 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,622,225
Number of Sequences: 27780
Number of extensions: 47605
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 12,740,198
effective HSP length: 37
effective length of database: 11,712,338
effective search space used: 222534422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)