Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L09
         (171 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56610.1 68416.m06295 expressed protein                             27   1.7  
At3g51400.1 68416.m05630 expressed protein contains Pfam profile...    27   2.2  
At4g12020.1 68417.m01912 protein kinase family protein similar t...    26   3.9  
At4g25250.1 68417.m03633 invertase/pectin methylesterase inhibit...    25   6.7  
At5g46140.1 68418.m05674 hypothetical protein contains Pfam prof...    25   8.9  

>At3g56610.1 68416.m06295 expressed protein 
          Length = 128

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 7   RLQDEGCCVTGFRSGRYCL 63
           RL+  GCC+  F  GR CL
Sbjct: 69  RLKHHGCCLEVFHMGRACL 87


>At3g51400.1 68416.m05630 expressed protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 277

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 48  WPLLPRLVLKMMTSTSYQ-WTSNRNNY 125
           W L+ +LV+K +TSTS Q  T +RN +
Sbjct: 187 WALVTKLVIKNVTSTSGQVRTGHRNEF 213


>At4g12020.1 68417.m01912 protein kinase family protein similar to
           mitogen-activated protein kinase [Arabidopsis thaliana]
           GI:1255448; contains Pfam profiles PF02671: Paired
           amphipathic helix repeat, PF03106: WRKY DNA-binding
           domain, PF00560: Leucine Rich Repeat, PF00069: Protein
           kinase domain, PF00931: NB-ARC domain
          Length = 1798

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 86  RHHFQDEPRQ*RPDLKPVTQQP 21
           R + QDEP++ +  LK +TQ P
Sbjct: 763 RFYLQDEPKKWQAALKEITQMP 784


>At4g25250.1 68417.m03633 invertase/pectin methylesterase inhibitor
           family protein similar to pectinesterase from
           Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
           SP|Q43143; contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 199

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 1   SCRLQDEGCCVTGFRSGR 54
           S  L DEG C  GF  GR
Sbjct: 149 SSALTDEGTCTDGFEEGR 166


>At5g46140.1 68418.m05674 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 313

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 150 TWLSNFKMNSCFCLMSID--TKLTSSFSGRAE 61
           TW S+ + + C+ +M ID   K+  S  GR E
Sbjct: 26  TWRSSTQSHGCYPMMMIDHILKVGDSSDGRVE 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,385,586
Number of Sequences: 28952
Number of extensions: 43678
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 12,070,560
effective HSP length: 37
effective length of database: 10,999,336
effective search space used: 208987384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)