BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0001_L08 (596 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 57 2e-09 SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 46 3e-06 SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 46 6e-06 SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 43 3e-05 SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 42 5e-05 SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 40 3e-04 SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 40 4e-04 SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.006 SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 36 0.006 SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 34 0.014 SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 34 0.014 SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 33 0.024 SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 33 0.024 SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 33 0.032 SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 32 0.073 SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 31 0.097 SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 30 0.29 SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.52 SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 29 0.68 SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 28 0.90 SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 1.2 SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 27 2.1 SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 26 3.6 SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 26 3.6 SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 4.8 SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 8.4 >SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces pombe|chr 2|||Manual Length = 199 Score = 56.8 bits (131), Expect = 2e-09 Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Frame = +1 Query: 373 AITTGPSKLLVSNLDFGVSDSDIQELF-SEFGILKSAAVHYDRSGRSLGTADVVFERRAD 549 ++ + SK++VSNL V+++ ++ELF G K ++ Y +GRS G A ++F R D Sbjct: 49 SVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGD 108 Query: 550 ALKAMKQYNGVPLDG 594 A +A +QY G +DG Sbjct: 109 ATRAYEQYEGRLVDG 123 >SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 274 Score = 46.4 bits (105), Expect = 3e-06 Identities = 25/64 (39%), Positives = 34/64 (53%) Frame = +1 Query: 403 VSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQYNGV 582 V NL + V + D+ LF F ++ ++YDR+GRS G+ DV FE DA A K Sbjct: 89 VENLHYQVLEKDVLSLFENFHPIR-VIMNYDRAGRSEGSCDVYFETSQDAEDAQKTLQST 147 Query: 583 PLDG 594 L G Sbjct: 148 NLKG 151 >SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Schizosaccharomyces pombe|chr 1|||Manual Length = 434 Score = 45.6 bits (103), Expect = 6e-06 Identities = 22/66 (33%), Positives = 37/66 (56%) Frame = +1 Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQYN 576 + V NL + SD ++ +LF++ G + A + Y+ +GRS G V FE DA ++++ N Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341 Query: 577 GVPLDG 594 G G Sbjct: 342 GYRYGG 347 Score = 31.1 bits (67), Expect = 0.13 Identities = 16/61 (26%), Positives = 30/61 (49%) Frame = +1 Query: 412 LDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQYNGVPLD 591 L + V D+++LF + G + A + ++ GRS G VV +A+ A++ + Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFM 249 Query: 592 G 594 G Sbjct: 250 G 250 >SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 604 Score = 43.2 bits (97), Expect = 3e-05 Identities = 20/67 (29%), Positives = 35/67 (52%) Frame = +1 Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQY 573 +L VSN+ F ++D D++ +F FG ++ + D RS G + + A A+++ Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400 Query: 574 NGVPLDG 594 NG L G Sbjct: 401 NGFDLAG 407 >SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Schizosaccharomyces pombe|chr 1|||Manual Length = 261 Score = 42.3 bits (95), Expect = 5e-05 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%) Frame = +1 Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKAMKQY 573 + +S L + +SDI+ F+ +G ++ V ++ +G+S+G A VVFER D A K Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161 Query: 574 NGVPLDG 594 G+ L+G Sbjct: 162 AGLMLNG 168 >SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 219 Score = 39.9 bits (89), Expect = 3e-04 Identities = 22/62 (35%), Positives = 32/62 (51%) Frame = +1 Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQY 573 +L V NL V+D + + FSE+ L V DR G++ G V F+ LKA ++ Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90 Query: 574 NG 579 NG Sbjct: 91 NG 92 >SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces pombe|chr 1|||Manual Length = 609 Score = 39.5 bits (88), Expect = 4e-04 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Frame = +1 Query: 379 TTGPSKLLVSNLDFGV--SDSDIQELFSEFGILKSAAV-HYDRSGRSLGTADVVFERRAD 549 T P L V NLD + + ++ELFS+FG +KS + Y + S G V F + Sbjct: 415 TIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFE 474 Query: 550 ALKAMKQYNGV 582 A++A+ NGV Sbjct: 475 AVQAINTLNGV 485 Score = 26.2 bits (55), Expect = 3.6 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 6/72 (8%) Frame = +1 Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGT------ADVVFERRADALK 558 + V NL SD+ ELF FG + + +S + A + FE + A Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81 Query: 559 AMKQYNGVPLDG 594 A+ NG G Sbjct: 82 AIASLNGSSFQG 93 >SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 674 Score = 35.5 bits (78), Expect = 0.006 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Frame = +1 Query: 394 KLLVSNLDFGVSDSD-IQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570 +L++ NL + + ++ FS+FG ++ + GR G A V + R A +AM Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNS 167 Query: 571 YNGVPLDG 594 NG +DG Sbjct: 168 LNGTEIDG 175 >SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schizosaccharomyces pombe|chr 2|||Manual Length = 137 Score = 35.5 bits (78), Expect = 0.006 Identities = 18/63 (28%), Positives = 36/63 (57%) Frame = +1 Query: 391 SKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570 S L + NL F ++ ++ +LF +G ++ + + ++ GTA VV+E DA +A ++ Sbjct: 12 SILFIKNLSFKITAEEMYDLFGRYGPVRQ--IRLGNTVQTRGTAFVVYENVQDARRACEK 69 Query: 571 YNG 579 +G Sbjct: 70 LSG 72 >SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces pombe|chr 1|||Manual Length = 369 Score = 34.3 bits (75), Expect = 0.014 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Frame = +1 Query: 388 PSKLL-VSNLDFGVSDSDIQELFSEFG-ILKSAAVHYDRSGRSLGTADVVFERRADALKA 561 PS +L V NLDF +D+D++E F + G I + + ++ +G+ G V F +KA Sbjct: 226 PSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKA 285 Query: 562 MK 567 M+ Sbjct: 286 ME 287 >SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces pombe|chr 3|||Manual Length = 183 Score = 34.3 bits (75), Expect = 0.014 Identities = 21/70 (30%), Positives = 35/70 (50%) Frame = +1 Query: 385 GPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAM 564 GP+ +++ NL G S D+ FG + + V+ D G+ A V F A A + + Sbjct: 98 GPTNVVIENLAPGTSSDDVAATLLNFGEILNCQVN-DSQGKV--RASVRFSTLASAQQVV 154 Query: 565 KQYNGVPLDG 594 ++ +GV DG Sbjct: 155 QKLDGVTADG 164 >SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces pombe|chr 2|||Manual Length = 217 Score = 33.5 bits (73), Expect = 0.024 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Frame = +1 Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKAMKQY 573 + + NLDF +++ DI +FSEFG + D+ +G+S G A + +E + + A+ Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92 Query: 574 NGVPL 588 V L Sbjct: 93 TNVKL 97 >SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 653 Score = 33.5 bits (73), Expect = 0.024 Identities = 16/68 (23%), Positives = 35/68 (51%) Frame = +1 Query: 373 AITTGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADA 552 A+ + + + NLD +++ + +LF +FG + S ++ D++ + G V + A Sbjct: 255 ALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECA 314 Query: 553 LKAMKQYN 576 KA+ + N Sbjct: 315 QKAVDELN 322 >SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 833 Score = 33.1 bits (72), Expect = 0.032 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Frame = +1 Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYD----RSGR--SLGTADVVFERRADALK 558 + V NL+F + Q++F SA + R G+ S+G V F+ +A A+ Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680 Query: 559 AMKQYNGVPLDG 594 AM NG LDG Sbjct: 681 AMHAMNGFVLDG 692 Score = 27.1 bits (57), Expect = 2.1 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +1 Query: 397 LLVSNLDFGVSDSDIQELFSEFGIL 471 LLV N +G S ++ LFS FG L Sbjct: 508 LLVKNFPYGTSAEELTSLFSPFGEL 532 >SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizosaccharomyces pombe|chr 2|||Manual Length = 282 Score = 31.9 bits (69), Expect = 0.073 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Frame = +1 Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKAMKQY 573 L V+NL + ++++LF FG ++ + D+ +GR+ G A V + R A+KA + Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRL 263 Query: 574 NG 579 +G Sbjct: 264 DG 265 >SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating transcription Rct1|Schizosaccharomyces pombe|chr 2|||Manual Length = 432 Score = 31.5 bits (68), Expect = 0.097 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = +1 Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKAMKQY 573 L V L+ D D++ +FS FG + S V D+ +G SL A + F+ + KA + Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305 Query: 574 NGVPLD 591 V +D Sbjct: 306 QNVLID 311 >SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schizosaccharomyces pombe|chr 2|||Manual Length = 249 Score = 29.9 bits (64), Expect = 0.29 Identities = 18/52 (34%), Positives = 27/52 (51%) Frame = +1 Query: 439 IQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQYNGVPLDG 594 ++ LF +G K V ++ R G A VVF+ +A +A+K G PL G Sbjct: 46 LEHLFGSYG--KVIDVQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYG 95 >SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 121 Score = 29.1 bits (62), Expect = 0.52 Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 1/66 (1%) Frame = +1 Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYD-RSGRSLGTADVVFERRADALKAMKQY 573 ++V+ + ++ +++LF++FG +K+ ++ D R+G G A + + A KA+ + Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71 Query: 574 NGVPLD 591 N LD Sbjct: 72 NLSLLD 77 >SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosaccharomyces pombe|chr 1|||Manual Length = 1017 Score = 28.7 bits (61), Expect = 0.68 Identities = 15/28 (53%), Positives = 17/28 (60%) Frame = +1 Query: 409 NLDFGVSDSDIQELFSEFGILKSAAVHY 492 +LD V D DIQ LFS F I KS +Y Sbjct: 473 SLDETVCDKDIQALFSIFNINKSVDQYY 500 >SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding protein 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 567 Score = 28.3 bits (60), Expect = 0.90 Identities = 19/70 (27%), Positives = 31/70 (44%) Frame = +1 Query: 382 TGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKA 561 T + L +SNL ++SDI LF I+ + + D +S G + R A Sbjct: 381 TESTNLYISNLPLHWNESDISTLFKPSKIISNRVLR-DSKEQSRGVGFARMQDRKTAEDI 439 Query: 562 MKQYNGVPLD 591 + ++N LD Sbjct: 440 INKFNNFVLD 449 >SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 661 Score = 27.9 bits (59), Expect = 1.2 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = +1 Query: 397 LLVSNLDFGVSDSDIQELFSEFGILK 474 L VSNL G S S I LFS +G +K Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVK 27 >SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|Schizosaccharomyces pombe|chr 1|||Manual Length = 832 Score = 27.1 bits (57), Expect = 2.1 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 3/37 (8%) Frame = -3 Query: 537 FKH---NICCT*RSSRSIIMNSCTLKNSKFREQFLNV 436 +KH NIC + R + +I SCT K +F+E+ L++ Sbjct: 291 YKHEYANICESLRRALVLIQGSCTEKILRFKEKILDL 327 >SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate transferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 453 Score = 26.2 bits (55), Expect = 3.6 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = -2 Query: 259 CLAILHLSGYYEIHHHVLVFCLYQIFCQHH 170 CLA++ L YY++H H+L + Q H Sbjct: 381 CLALMILCLYYDLHMHLLAHPISLSASQSH 410 >SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizosaccharomyces pombe|chr 1|||Manual Length = 944 Score = 26.2 bits (55), Expect = 3.6 Identities = 9/26 (34%), Positives = 16/26 (61%) Frame = -3 Query: 384 CCDSTTSWNLPFTKIIEHVMFPCAVN 307 CC+S ++N+P + I++ M C N Sbjct: 833 CCESVNNFNVPCSATIQNDMVVCRSN 858 >SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 263 Score = 25.8 bits (54), Expect = 4.8 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = +2 Query: 317 HGNMTCSMILVKGRFQEVVLSQQVPQS 397 HG + C++IL KG +S Q PQ+ Sbjct: 149 HGTILCALILCKGMLHFDSISFQSPQN 175 >SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces pombe|chr 3|||Manual Length = 1008 Score = 25.0 bits (52), Expect = 8.4 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = +1 Query: 400 LVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGR 507 LV FGV++ D E+ E K + YD+ GR Sbjct: 660 LVWRRHFGVNNMDPDEIQEENATGKQVLLGYDKDGR 695 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,342,510 Number of Sequences: 5004 Number of extensions: 46313 Number of successful extensions: 132 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 126 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 131 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 260219058 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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