Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_L08
(596 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 8e-15
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 48 6e-06
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 7e-05
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 43 2e-04
SB_9041| Best HMM Match : RRM_1 (HMM E-Value=1.4e-10) 43 2e-04
SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 43 2e-04
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 41 7e-04
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 9e-04
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 36 0.025
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 35 0.057
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 32 0.40
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 31 0.53
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_57699| Best HMM Match : efhand (HMM E-Value=1e-08) 29 2.9
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 29 2.9
SB_43009| Best HMM Match : NHase_beta (HMM E-Value=0.46) 28 5.0
SB_22097| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_14339| Best HMM Match : TFIIB (HMM E-Value=0.0037) 28 6.6
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 27 8.7
>SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 77.4 bits (182), Expect = 8e-15
Identities = 36/49 (73%), Positives = 41/49 (83%)
Frame = +1
Query: 445 ELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQYNGVPLD 591
ELFSEFG +K + VHYD SGRS GTA+VVF RR DA +A+KQYNGVPLD
Sbjct: 1 ELFSEFGQVKRSCVHYDASGRSHGTAEVVFVRREDAQQALKQYNGVPLD 49
Score = 52.8 bits (121), Expect = 2e-07
Identities = 46/132 (34%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Frame = +1
Query: 115 DQIEMALDDIIKASKKGS-GGVGRKFDTXXXXXXXXXXXXXXXXXXXXXXXXXXXTKTTN 291
DQ++M+LDDIIK +KK S GG GR ++T
Sbjct: 140 DQLDMSLDDIIKQNKKSSRGGRGR----------GGSRGPGRRGGGPVGRGRTRGNRSTP 189
Query: 292 YTRG-DVNSTWKHDMFNDFGERKVPRSGA------ITTGPSKLLVSNLDFGVSDSDIQEL 450
Y+R ++ W+HD F+ G SG I+TG SKL +SNLDFGVSDSDI
Sbjct: 190 YSRPRELPDRWQHDKFDGRGSGGRSFSGGSGGAGGISTG-SKLSISNLDFGVSDSDISFC 248
Query: 451 FSEFGILKSAAV 486
++ + AA+
Sbjct: 249 ANDPEVFVQAAL 260
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 48.0 bits (109), Expect = 6e-06
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +1
Query: 385 GPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYD-RSGRSLGTADVVFERRADALKA 561
GP++L V +L F ++++ ++ +F FG + S + YD + RS G V F A +A
Sbjct: 240 GPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRA 299
Query: 562 MKQYNGVPLDG 594
M+Q NG L G
Sbjct: 300 MEQMNGFELAG 310
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +1
Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAM 564
L VSNL F +S+I+ELFS+ G++K + +R+G+ G V +E+ + A A+
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAV 228
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +1
Query: 367 SGAITTGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERR 543
SGA + V N+ + S+ ++E+FSE G + S + +DR +G+ G ++ +
Sbjct: 17 SGAADRSLRSVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQ 76
Query: 544 ADALKAMKQYNGVPLDG 594
AL AM+ NG L+G
Sbjct: 77 ETALSAMRNLNGYELNG 93
>SB_9041| Best HMM Match : RRM_1 (HMM E-Value=1.4e-10)
Length = 141
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/68 (36%), Positives = 38/68 (55%)
Frame = +1
Query: 391 SKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570
+++ +SNL VS DI+ELF G+LKS + G A+VV+ + DA+ A +
Sbjct: 16 TRVTISNLHPAVSRQDIEELFGAIGVLKSCKM------LRAGMAEVVYTTKEDAVTAYAR 69
Query: 571 YNGVPLDG 594
Y+ LDG
Sbjct: 70 YHNRNLDG 77
>SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/68 (36%), Positives = 38/68 (55%)
Frame = +1
Query: 391 SKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570
+++ +SNL VS DI+ELF G+LKS + G A+VV+ + DA+ A +
Sbjct: 221 TRVTISNLHPAVSRQDIEELFGAIGVLKSCKM------LRAGMAEVVYTTKEDAVTAYAR 274
Query: 571 YNGVPLDG 594
Y+ LDG
Sbjct: 275 YHNRNLDG 282
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +1
Query: 364 RSGAITTGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGR-SLGTADVVFER 540
R + T P+KL V++L V+ +QE+FS +G +K+ + DR+ S G A V +
Sbjct: 1148 RKRSPTPKPTKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVD 1207
Query: 541 RADALKAMKQYNGVPLDG 594
+ KA+K +G +DG
Sbjct: 1208 PEECEKALKHMDGGQIDG 1225
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 41.1 bits (92), Expect = 7e-04
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 16/88 (18%)
Frame = +1
Query: 379 TTGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSG----------------RS 510
++GP +L V+N+ F D+D++++F FG++ + Y+ G R
Sbjct: 64 SSGPKRLHVTNIPFRFRDNDLRQMFGSFGVIADVEIIYNERGSKHAVRFPTRPNPLNLRI 123
Query: 511 LGTADVVFERRADALKAMKQYNGVPLDG 594
G V F A+A KA ++ NG +DG
Sbjct: 124 EGFGFVTFNTAAEANKAREKLNGTIVDG 151
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 40.7 bits (91), Expect = 9e-04
Identities = 24/63 (38%), Positives = 37/63 (58%)
Frame = +1
Query: 382 TGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKA 561
T + L V NLD V++ +++ FS+FG ++ A V D GRS G V F R+ +A A
Sbjct: 123 THAAALRVKNLDNLVTNELLEQAFSQFGDVERAVVVCDVRGRSKGHGIVEFSRKNNAHNA 182
Query: 562 MKQ 570
M++
Sbjct: 183 MQK 185
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQY 573
KL + NL+F + +I++ F EFG+ K + SGRS G V+ + A+++
Sbjct: 10 KLYIGNLNFNSDEGEIEQAFEEFGVEKVDILRDKESGRSRGFGFVLLQSADQIAPAIEKM 69
Query: 574 NGVPLDG 594
N + G
Sbjct: 70 NQSSVGG 76
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQY 573
K + NLDF V+++D+Q+ FS + ++ + + R G A V F + + A+ +
Sbjct: 231 KCYIGNLDFKVNEADLQDRFSRYDVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINEL 290
Query: 574 NGVPLDG 594
+G DG
Sbjct: 291 DGQEFDG 297
Score = 29.1 bits (62), Expect = 2.9
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +1
Query: 382 TGPSKLLVSNLDFGVSDSDIQELFSEFG--ILKSAAVHYDR-SGRSLGTADVVFERRADA 552
T K LV+++ +S+ LF G L S V DR +GR G V F +
Sbjct: 4 TANVKCLVASIPLCFVESEADVLFLRNGSKFLLSVKVITDRETGRPRGFGFVTFGSEDEM 63
Query: 553 LKAMKQYNGVPLDG 594
KA+ +++G LDG
Sbjct: 64 DKAIDKFDGEDLDG 77
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +1
Query: 361 PRSGAITTGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRS-GRSLGTADVVFE 537
P + + L+++ + +S DI+++F G + S + DR+ G+SLG A V ++
Sbjct: 17 PMENGTSDERTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYD 76
Query: 538 RRADALKAMKQYNGVPL 588
DA KA+++ NG L
Sbjct: 77 NPDDANKAVREMNGARL 93
>SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 621
Score = 36.7 bits (81), Expect = 0.014
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 403 VSNLDFGVSDSDIQELFSEFGIL-KSAAVHYDRSGRSLGTADVVFERRADALKAMKQYNG 579
+ NL ++ I + F F +L ++ +HY GRS G A + F +DA A+ Q N
Sbjct: 549 IRNLPSSITADQILDFFYGFNVLPETIKIHYLSPGRSSGDAMITFPTSSDAYAAIDQLNF 608
Query: 580 VPL 588
P+
Sbjct: 609 RPV 611
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 35.9 bits (79), Expect = 0.025
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +1
Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYD-RSGRSLGTADVVFERRADALKAMKQY 573
L V L+ +D D++ +FS FG + S V D ++G SL A + FE+ D +A +
Sbjct: 122 LFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERAYFKM 181
Query: 574 NGVPLD 591
+ V +D
Sbjct: 182 DNVLID 187
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 34.7 bits (76), Expect = 0.057
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 403 VSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKAMKQYNG 579
V+NL +SD+QELF G + + D+ + +S G A + F R DA +A++ +G
Sbjct: 185 VTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAARAIEVLSG 244
Query: 580 VPLD 591
D
Sbjct: 245 FGYD 248
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = +1
Query: 403 VSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQYNGV 582
+ NL + V + ++E F ++ + +GR G V F + + KA+ +++G
Sbjct: 9 IGNLSYSVDEQALEEKFHGCDVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQ 68
Query: 583 PLDG 594
DG
Sbjct: 69 DFDG 72
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 343 FGERKVPRSGAITTGPSKLLVSNLDFGVSDSDIQELFSEFGIL 471
FG ++ + ++ + NL GV D+D+ E+FS++G +
Sbjct: 341 FGSKEGRMAARSAPDSHQVFIGNLPSGVKDADVNEVFSKYGTI 383
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGT----ADVVFERRADALKA 561
KL + NLD +S+ +I ++ +FG ++ + +G + G V F+++ DA KA
Sbjct: 388 KLWIGNLDKRLSEFNILKILQQFGEIEHFQFLFHGNGPNRGEPRGYCFVEFKKKEDARKA 447
Query: 562 MKQYN 576
++ N
Sbjct: 448 LRGLN 452
>SB_57699| Best HMM Match : efhand (HMM E-Value=1e-08)
Length = 676
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 336 EHVMFPCAVNITPCVIRSLGY 274
EH+ PCA+N P V+R + Y
Sbjct: 67 EHIFVPCALNGIPVVVRVMSY 87
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +1
Query: 403 VSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQYNGV 582
+ L V+++ + ELF++FG +K + D SG+S + V F A A NG
Sbjct: 528 IGGLSEDVTENVLLELFNKFGPVKDVVILRDESGKSRQSGFVHFWSSDVAEAANVGMNGC 587
Query: 583 PLDG 594
+ G
Sbjct: 588 DILG 591
>SB_43009| Best HMM Match : NHase_beta (HMM E-Value=0.46)
Length = 543
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 487 HYDRSGRSLGTADVVFERRADALKAMKQYNGVPLDG 594
H D G LG D VF +DA+ +++Y G P +G
Sbjct: 479 HIDMGGGYLGCEDRVFGGASDAIDVVRKY-GFPTNG 513
>SB_22097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 433 SDIQELFSEFGILKSAAVHYDRSGRSLG 516
SD+QE+F+ F L V+Y+ +G +LG
Sbjct: 43 SDLQEMFALFDPLSKLGVYYNPNGFTLG 70
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +1
Query: 409 NLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQYNGVPL 588
NL +++ ++E +S++G + DR + A V F R ALKA+++ +G +
Sbjct: 335 NLSPSITEEKLKEEYSQYGAV-------DRVKKLKDYAFVHFTERDHALKAIEETDGKEM 387
Query: 589 DG 594
DG
Sbjct: 388 DG 389
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKA 561
L V NL+ G+S D++ F +FG++ + G+ A V F A KA
Sbjct: 239 LFVGNLETGISCQDLRLSFEKFGVVLDVDIKRPARGQGNTYAFVKFADLDVAAKA 293
>SB_14339| Best HMM Match : TFIIB (HMM E-Value=0.0037)
Length = 580
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +1
Query: 334 FNDFGERKVPRSGAITTGPSKLLVSNLDFG-VSDSDIQELFSEFGILKSAAVHYDRSGRS 510
FN ER V R+ + P N+ G V + D L SEF + A Y+ S S
Sbjct: 177 FNKMEERTVERTAEDRSPPPY----NIPNGPVPEVDAPILVSEFALFDRALTEYETSRAS 232
Query: 511 LGTAD 525
LG D
Sbjct: 233 LGDED 237
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 391 SKLLVSNLDFGVSDSDIQELFSEFG-ILKSAAVHYDR-SGRSLGTADVVFERRADALKAM 564
+ L + NLD V + + + FS FG IL++ + D +G S G A + F + A+
Sbjct: 100 ANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAI 159
Query: 565 KQYNG 579
+ NG
Sbjct: 160 EAMNG 164
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,132,513
Number of Sequences: 59808
Number of extensions: 339520
Number of successful extensions: 873
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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