Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_L08
(596 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 113 6e-26
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 113 6e-26
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 108 2e-24
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 98 3e-21
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 90 9e-19
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 82 2e-16
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 55 3e-08
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 54 1e-07
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 54 1e-07
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 52 3e-07
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 52 4e-07
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 51 7e-07
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 49 2e-06
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 48 5e-06
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 48 6e-06
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 48 6e-06
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 48 6e-06
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 46 1e-05
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 45 4e-05
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 43 1e-04
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 43 1e-04
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 43 1e-04
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 42 3e-04
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 41 5e-04
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 41 7e-04
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 41 7e-04
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 40 0.001
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 40 0.001
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 39 0.003
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 39 0.003
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 38 0.005
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 38 0.005
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 38 0.005
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 38 0.005
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 38 0.005
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 38 0.005
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 37 0.009
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 37 0.012
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 37 0.012
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 37 0.012
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 36 0.016
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 36 0.021
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 36 0.021
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 36 0.021
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 36 0.021
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 36 0.021
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 35 0.036
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 35 0.036
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 35 0.036
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 35 0.036
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 34 0.063
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 34 0.063
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 34 0.063
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 33 0.14
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 33 0.14
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 33 0.14
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 33 0.14
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 33 0.14
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 33 0.14
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 33 0.19
At2g34315.1 68415.m04200 disease resistance protein-related simi... 33 0.19
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 32 0.25
At2g47310.1 68415.m05906 flowering time control protein-related ... 32 0.25
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 32 0.25
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 32 0.25
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 32 0.25
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 32 0.25
At5g11470.1 68418.m01339 bromo-adjacent homology (BAH) domain-co... 32 0.33
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 32 0.33
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 31 0.44
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 31 0.44
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 31 0.44
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 31 0.58
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 31 0.58
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 31 0.58
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 31 0.77
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 0.77
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 0.77
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 30 1.0
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 30 1.0
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 30 1.0
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 30 1.0
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 29 2.4
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 29 2.4
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 29 3.1
At1g05020.1 68414.m00503 epsin N-terminal homology (ENTH) domain... 29 3.1
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 29 3.1
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 28 4.1
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 28 5.4
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 28 5.4
At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to ... 28 5.4
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 27 7.2
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 27 7.2
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 27 7.2
At1g22170.1 68414.m02771 phosphoglycerate/bisphosphoglycerate mu... 27 7.2
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 27 9.5
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 27 9.5
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 27 9.5
At1g75450.1 68414.m08764 FAD-binding domain-containing protein /... 27 9.5
At1g71680.1 68414.m08271 lysine and histidine specific transport... 27 9.5
At1g48640.1 68414.m05444 lysine and histidine specific transport... 27 9.5
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 27 9.5
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 113 bits (273), Expect = 6e-26
Identities = 69/160 (43%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Frame = +1
Query: 121 IEMALDDIIKASKKGSGGVGRKFDTXXXXXXXXXXXXXXXXXXXXXXXXXXXTKTTNYTR 300
++M+LDD+I ++K GG G T T++ Y
Sbjct: 5 LDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKS---------TRSAPYQS 55
Query: 301 GDVNSTWKHDMFNDFGE--RKVPRSGAITTGPSKLLVSNLDFGVSDSDIQELFSEFGILK 474
STW HDMF+D E R S I TG +KL +SNLD+GV + DI+ELF+E G LK
Sbjct: 56 AP-ESTWGHDMFSDRSEDHRSGRSSAGIETG-TKLYISNLDYGVMNEDIKELFAEVGELK 113
Query: 475 SAAVHYDRSGRSLGTADVVFERRADALKAMKQYNGVPLDG 594
VH+DRSGRS GTA+VV+ RR DAL A+K+YN V LDG
Sbjct: 114 RYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDG 153
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 113 bits (273), Expect = 6e-26
Identities = 69/161 (42%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Frame = +1
Query: 121 IEMALDDIIKASKKGSGGVGRKFDTXXXXXXXXXXXXXXXXXXXXXXXXXXXTKTTNYTR 300
++M+LDD+I ++K GG G T T++ Y
Sbjct: 5 LDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKS---------TRSAPYQS 55
Query: 301 GDV-NSTWKHDMFNDFGE--RKVPRSGAITTGPSKLLVSNLDFGVSDSDIQELFSEFGIL 471
STW HDMF+D E R S I TG +KL +SNLD+GV + DI+ELF+E G L
Sbjct: 56 AKAPESTWGHDMFSDRSEDHRSGRSSAGIETG-TKLYISNLDYGVMNEDIKELFAEVGEL 114
Query: 472 KSAAVHYDRSGRSLGTADVVFERRADALKAMKQYNGVPLDG 594
K VH+DRSGRS GTA+VV+ RR DAL A+K+YN V LDG
Sbjct: 115 KRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDG 155
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 108 bits (260), Expect = 2e-24
Identities = 68/173 (39%), Positives = 95/173 (54%), Gaps = 15/173 (8%)
Frame = +1
Query: 121 IEMALDDIIKASKK-----GSGGVGRKFDTXXXXXXXXXXXXXXXXXXXXXXXXXXXTKT 285
++M+LDDIIK+++K G GG+G +T ++
Sbjct: 5 LDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAPYSRP 64
Query: 286 TNYTRGDVNSTWKHDMFND-------FGERKVPRSG---AITTGPSKLLVSNLDFGVSDS 435
+ ++ W++D+F FG + G +I TG +KL +SNLD+GVS+
Sbjct: 65 IQQQQAH-DAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETG-TKLYISNLDYGVSNE 122
Query: 436 DIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQYNGVPLDG 594
DI+ELFSE G LK +HYDRSGRS GTA+VVF RR DAL A+K+YN V LDG
Sbjct: 123 DIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDG 175
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 98.3 bits (234), Expect = 3e-21
Identities = 52/90 (57%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
Frame = +1
Query: 331 MFNDFGE--RKVPRSGAITTGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSG 504
MF+D E R S I TG +KL +SNLD+GV + DI+ELF+E G LK VH+DRSG
Sbjct: 1 MFSDRSEDHRSGRSSAGIETG-TKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSG 59
Query: 505 RSLGTADVVFERRADALKAMKQYNGVPLDG 594
RS GTA+VV+ RR DAL A+K+YN V LDG
Sbjct: 60 RSKGTAEVVYSRRGDALAAVKKYNDVQLDG 89
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 90.2 bits (214), Expect = 9e-19
Identities = 46/92 (50%), Positives = 66/92 (71%)
Frame = +1
Query: 319 WKHDMFNDFGERKVPRSGAITTGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR 498
W+ +F D G R SG + G ++L V+NLD GV++ DI+ELFSE G ++ A+HYD+
Sbjct: 72 WQSGLFED-GLRAAGASG-VEVG-TRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDK 128
Query: 499 SGRSLGTADVVFERRADALKAMKQYNGVPLDG 594
+GR GTA+VV+ RR+DA +A+K+YN V LDG
Sbjct: 129 NGRPSGTAEVVYPRRSDAFQALKKYNNVLLDG 160
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 82.2 bits (194), Expect = 2e-16
Identities = 35/64 (54%), Positives = 53/64 (82%)
Frame = +1
Query: 403 VSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQYNGV 582
++NLD GV++ DI+EL++E G LK A+HYD++GR G+A+VV+ RR+DA++AM++YN V
Sbjct: 111 ITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNV 170
Query: 583 PLDG 594
LDG
Sbjct: 171 LLDG 174
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 55.2 bits (127), Expect = 3e-08
Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +1
Query: 367 SGAITTGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGR-SLGTADVVFERR 543
SG + S L VSNLDF +++SDI LFS FG + V DR R S G A V++ R
Sbjct: 49 SGGLAPSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSR 108
Query: 544 ADALKAMKQYNGVPLDG 594
DA KA + + L+G
Sbjct: 109 EDAAKAARSMDAKILNG 125
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +1
Query: 367 SGAITTGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERR 543
SG+ + ++L V NL +GV D ++ LF+E G + A V YDR SGRS G V
Sbjct: 241 SGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSS 300
Query: 544 ADALKAMKQYNGVPLDG 594
+ KA+ NG LDG
Sbjct: 301 QEVQKAINSLNGADLDG 317
Score = 48.4 bits (110), Expect = 4e-06
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +1
Query: 328 DMFNDFGERKVPRSGAITTGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SG 504
DMF D G+ P + KL V NL F V + + +LF G ++ V YD+ +G
Sbjct: 79 DMFAD-GDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTG 137
Query: 505 RSLGTADVVFERRADALKAMKQYNGVPLDG 594
RS G V A+ A +Q+NG +G
Sbjct: 138 RSRGFGFVTMSTAAEVEAAAQQFNGYEFEG 167
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +1
Query: 367 SGAITTGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERR 543
SG+ + ++L V NL +GV D ++ LF+E G + A V YDR SGRS G V
Sbjct: 249 SGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSS 308
Query: 544 ADALKAMKQYNGVPLDG 594
+ KA+ NG LDG
Sbjct: 309 QEVQKAINSLNGADLDG 325
Score = 48.4 bits (110), Expect = 4e-06
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +1
Query: 328 DMFNDFGERKVPRSGAITTGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SG 504
DMF D G+ P + KL V NL F V + + +LF G ++ V YD+ +G
Sbjct: 79 DMFAD-GDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTG 137
Query: 505 RSLGTADVVFERRADALKAMKQYNGVPLDG 594
RS G V A+ A +Q+NG +G
Sbjct: 138 RSRGFGFVTMSTAAEVEAAAQQFNGYEFEG 167
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 52.0 bits (119), Expect = 3e-07
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +1
Query: 391 SKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKAMK 567
+++ V NL +GV D ++ LFSE G + A V YDR SGRS G V ++ + A+K
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 568 QYNGVPLDG 594
+G LDG
Sbjct: 264 SLDGADLDG 272
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKAMKQ 570
KL V NL F V + + +LF G ++ V YD+ +GRS G V ++ A +Q
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 571 YNGVPLDG 594
+NG LDG
Sbjct: 152 FNGYELDG 159
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 51.6 bits (118), Expect = 4e-07
Identities = 26/66 (39%), Positives = 38/66 (57%)
Frame = +1
Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQYN 576
L V NLD V+D ++ELF+EFG + S V D SG S G+ V F ++A + + + N
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 577 GVPLDG 594
G + G
Sbjct: 390 GKMVGG 395
Score = 37.1 bits (82), Expect = 0.009
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYD-RSGRSLGTADVVFERRADALKAMKQY 573
L V +LDF V+DS + + F+E + S V D + SLG V + DA KAM++
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 574 NGVPLDG 594
N L+G
Sbjct: 108 NYSYLNG 114
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 50.8 bits (116), Expect = 7e-07
Identities = 26/63 (41%), Positives = 37/63 (58%)
Frame = +1
Query: 391 SKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570
S L V NLD +SD ++E+FS FG + S+ V D +G S G+ V F +A +AM Q
Sbjct: 132 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQ 191
Query: 571 YNG 579
+G
Sbjct: 192 LSG 194
Score = 47.6 bits (108), Expect = 6e-06
Identities = 29/83 (34%), Positives = 41/83 (49%)
Frame = +1
Query: 343 FGERKVPRSGAITTGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTA 522
F R+ S A T + + V NL +D D++ F E+G + SA V D G+S G
Sbjct: 13 FLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFG 72
Query: 523 DVVFERRADALKAMKQYNGVPLD 591
V FE DA +A++ NG D
Sbjct: 73 FVNFENADDAARAVESLNGHKFD 95
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/63 (39%), Positives = 36/63 (57%)
Frame = +1
Query: 391 SKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570
S L + NLD V+D ++E+FSE+G + S V + G S G V + +AL AMK+
Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKE 387
Query: 571 YNG 579
NG
Sbjct: 388 MNG 390
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/70 (34%), Positives = 36/70 (51%)
Frame = +1
Query: 382 TGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKA 561
+G + + NLD + + + E FS FG + S V D GRS G V FE+ A A
Sbjct: 129 SGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAA 188
Query: 562 MKQYNGVPLD 591
+ + NG+ L+
Sbjct: 189 IDKLNGMLLN 198
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +1
Query: 373 AITTGP-SKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRAD 549
A+ T P S L V +LD V++S + +LF++ + + V D + RSLG A V F D
Sbjct: 38 ALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPED 97
Query: 550 ALKAMKQYNGVPL 588
A +AM+ N P+
Sbjct: 98 ASRAMESLNYAPI 110
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 48.0 bits (109), Expect = 5e-06
Identities = 26/61 (42%), Positives = 34/61 (55%)
Frame = +1
Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQYN 576
L V NLD V ++ ++ELFSEFG + S V +G S G V F +A KAM + N
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 577 G 579
G
Sbjct: 285 G 285
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/67 (37%), Positives = 39/67 (58%)
Frame = +1
Query: 391 SKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570
+ + V NL +D+D++ LF EFG + SA V D G+S V FE+ A+ A+++
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEK 178
Query: 571 YNGVPLD 591
NGV +D
Sbjct: 179 MNGVVVD 185
Score = 35.9 bits (79), Expect = 0.021
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +1
Query: 382 TGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKA 561
+G + V NLD + + + ++FS FG + S V D SG S G V F A
Sbjct: 28 SGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTA 87
Query: 562 MKQYNG 579
+NG
Sbjct: 88 CNFHNG 93
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 47.6 bits (108), Expect = 6e-06
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +1
Query: 370 GAITTGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRA 546
G++ SKL V L +G DS +++ F+ FG + A V DR +GRS G V F
Sbjct: 28 GSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87
Query: 547 DALKAMKQYNGVPLDG 594
A A+K+ +G L+G
Sbjct: 88 SANNAIKEMDGKELNG 103
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 47.6 bits (108), Expect = 6e-06
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +1
Query: 370 GAITTGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRA 546
G++ SKL V L +G DS +++ F+ FG + A V DR +GRS G V F
Sbjct: 28 GSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87
Query: 547 DALKAMKQYNGVPLDG 594
A A+K+ +G L+G
Sbjct: 88 SANNAIKEMDGKELNG 103
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 47.6 bits (108), Expect = 6e-06
Identities = 23/67 (34%), Positives = 35/67 (52%)
Frame = +1
Query: 391 SKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570
+ + V NL +SD ++ ++F EFG+ S + D G+S G V FE DA +A+
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 571 YNGVPLD 591
NG D
Sbjct: 284 LNGKTFD 290
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/67 (34%), Positives = 35/67 (52%)
Frame = +1
Query: 382 TGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKA 561
+G + + NLD + + + E FS FG + S V D +GRS G V FE+ A A
Sbjct: 133 SGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAA 192
Query: 562 MKQYNGV 582
+ + NG+
Sbjct: 193 IDKLNGM 199
Score = 46.4 bits (105), Expect = 1e-05
Identities = 22/63 (34%), Positives = 36/63 (57%)
Frame = +1
Query: 391 SKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570
+ L + NLD V D ++E+FSE+G + S+ V + G S G V + +AL+A+ +
Sbjct: 332 ANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSE 391
Query: 571 YNG 579
NG
Sbjct: 392 MNG 394
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/66 (31%), Positives = 37/66 (56%)
Frame = +1
Query: 391 SKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570
+ + V NL + + ++++ F +FG++ SA V D+SG S V FE A A+++
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 571 YNGVPL 588
NG+ L
Sbjct: 289 MNGISL 294
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/66 (34%), Positives = 35/66 (53%)
Frame = +1
Query: 391 SKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570
S L +LD V+++ + +LF + S V D++ RSLG A + F DA +AM+
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEA 108
Query: 571 YNGVPL 588
N PL
Sbjct: 109 LNYTPL 114
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 44.8 bits (101), Expect = 4e-05
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +1
Query: 391 SKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKAMK 567
SKL + L + V + +++ FS FG + + YD+ SGRS G V F DAL A
Sbjct: 41 SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKD 100
Query: 568 QYNGVPLDG 594
+G L G
Sbjct: 101 AMDGKGLLG 109
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFG-ILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570
+ V L + +D D+Q FS+FG ++ S ++ SGRS G V F+ A+++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 571 YNGVPLDG 594
NG LDG
Sbjct: 67 MNGKELDG 74
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFG-ILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570
+ V L + +D D+Q FS+FG ++ S ++ SGRS G V F+ A+++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 571 YNGVPLDG 594
NG LDG
Sbjct: 67 MNGKELDG 74
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFG-ILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570
+ V L + +D D+Q FS+FG ++ S ++ SGRS G V F+ A+++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 571 YNGVPLDG 594
NG LDG
Sbjct: 67 MNGKELDG 74
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 41.9 bits (94), Expect = 3e-04
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +1
Query: 346 GERKVPRSGAITTGPSKLLVSNLDFGVSDSDIQELFSEFG-ILKSAAVHYDRSGRSLGTA 522
G+ + + ++ + S L V VS+ ++++FSEFG + + +R+ +SLG
Sbjct: 62 GDDETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYG 121
Query: 523 DVVFERRADALKAMKQYNGVPLDG 594
V F + DA A++ NG DG
Sbjct: 122 YVWFNSKEDAQSAVEAMNGKFFDG 145
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 41.1 bits (92), Expect = 5e-04
Identities = 23/63 (36%), Positives = 35/63 (55%)
Frame = +1
Query: 391 SKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570
+ L + NLD VS+ ++E F+EFG + S A+ D + G A V F+ DA +A +
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAET 260
Query: 571 YNG 579
NG
Sbjct: 261 VNG 263
Score = 40.7 bits (91), Expect = 7e-04
Identities = 19/68 (27%), Positives = 37/68 (54%)
Frame = +1
Query: 391 SKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570
S + V N++ V++ ++++ FS+ G + S + D G+S G V F +A+ A+K
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKT 363
Query: 571 YNGVPLDG 594
++G G
Sbjct: 364 FHGQMFHG 371
Score = 34.7 bits (76), Expect = 0.047
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +1
Query: 385 GPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAM 564
G + V NL V+++ +Q++F +FG + S V G+S G V FE+ A A+
Sbjct: 110 GVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAI 169
Query: 565 KQYN 576
+ N
Sbjct: 170 QTLN 173
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 40.7 bits (91), Expect = 7e-04
Identities = 22/68 (32%), Positives = 37/68 (54%)
Frame = +1
Query: 391 SKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570
S L V NL ++++ ++E+F +G + SA V +GRS G V F ++ +A +
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRY 363
Query: 571 YNGVPLDG 594
NG +DG
Sbjct: 364 LNGFLVDG 371
Score = 38.7 bits (86), Expect = 0.003
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = +1
Query: 391 SKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570
+ + V NL V+D + LFS++G + S V D GRS G V F +A KAM+
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMES 261
Query: 571 YNGVPL 588
G+ L
Sbjct: 262 LCGLQL 267
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 40.7 bits (91), Expect = 7e-04
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +1
Query: 382 TGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALK 558
T P +L VS L ++ +Q+ F+ FG L A V DR SGRS G V + DA K
Sbjct: 32 TSP-RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEK 90
Query: 559 AMKQYNGVPLDG 594
A + N LDG
Sbjct: 91 AKAEMNAKFLDG 102
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQY 573
KL V L VS++++Q LFSE+G +K + S G + +E + A+ AM+
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 169
Query: 574 NG 579
NG
Sbjct: 170 NG 171
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQY 573
KL V L VS++++Q LFSE+G +K + S G + +E + A+ AM+
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 160
Query: 574 NG 579
NG
Sbjct: 161 NG 162
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +1
Query: 379 TTGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYD-RSGRSLGTADVVFERRADAL 555
++GPS LL+ NL +D+++ F FG LK + + +G G V + DA
Sbjct: 43 SSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAA 102
Query: 556 KAMKQYNGVPLDG 594
+AMK+ N + G
Sbjct: 103 EAMKRMNHKVIGG 115
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKAMKQ 570
+ + L + SD +++ F ++G L A V D+ SGRS G + F+ + +A+
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 571 YNGVPLDG 594
NG+ LDG
Sbjct: 68 MNGMDLDG 75
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.9 bits (84), Expect = 0.005
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +1
Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKAMKQY 573
LLV N+ F + D+ LF+++G + + DR +G S G A V ++ + +A KA+++
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 574 NGVPLDG 594
+G +DG
Sbjct: 78 DGRVVDG 84
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.9 bits (84), Expect = 0.005
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +1
Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKAMKQY 573
LLV N+ F + D+ LF+++G + + DR +G S G A V ++ + +A KA+++
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 574 NGVPLDG 594
+G +DG
Sbjct: 78 DGRVVDG 84
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFG-ILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570
+ V L + +D D+Q FS+FG ++ S ++ SGRS G V F+ A+++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 571 YNG 579
NG
Sbjct: 67 MNG 69
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKAMKQ 570
++ V NL + V + +++LFSE G + A V YDR +GRS G V + +A+
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 571 YNGVPLDG 594
+G L+G
Sbjct: 305 LDGQNLEG 312
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 37.9 bits (84), Expect = 0.005
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELF--SEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMK 567
KL VSNL + + ++ELF ++F + + V D GRS G V F R +A A+
Sbjct: 195 KLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAIT 254
Query: 568 QYNGVPLDG 594
+ NG + G
Sbjct: 255 KLNGKEIMG 263
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +1
Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYD-RSGRSLGTADVVFERRADALKAMKQY 573
+LVS + + DI F +FG +K+ ++ D RSG G A + +E++ +A A+
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156
Query: 574 NGVPL 588
NG L
Sbjct: 157 NGAEL 161
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 37.1 bits (82), Expect = 0.009
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 388 PSKLLVSNLDFGVSDSDIQELFSEF-GILKSAAVHYDRSGRSLGTADVVFERRADALKAM 564
P K+ NL + ++ +++ F + G+L + ++ +GRS G + FE + A+
Sbjct: 218 PHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSAL 277
Query: 565 KQYNGVPLDG 594
NGV ++G
Sbjct: 278 ATMNGVEVEG 287
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 36.7 bits (81), Expect = 0.012
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKAMKQ 570
KL V NL + V+ + F E G + A V +D +GRS G V + +A+ A++
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 571 YNGVPLDG 594
+G L+G
Sbjct: 238 LDGFELEG 245
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 36.7 bits (81), Expect = 0.012
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRS-GRSLGTADVVFERRADALKAMKQY 573
L V +L V+++ ++E+F FG + + DR+ G V F+ RADA KA
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 574 NGVPLDG 594
+G +DG
Sbjct: 160 DGAQIDG 166
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 36.7 bits (81), Expect = 0.012
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRS-GRSLGTADVVFERRADALKAMKQY 573
L V +L V+++ ++E+F FG + + DR+ G V F+ RADA KA
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 574 NGVPLDG 594
+G +DG
Sbjct: 160 DGAQIDG 166
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 36.3 bits (80), Expect = 0.016
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRS-GRSLGTADVVFERRADALKAMK 567
KL+V + + + +++ S+FG L+ V DRS GRS G V F DA A+K
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK 62
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 35.9 bits (79), Expect = 0.021
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +1
Query: 391 SKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570
+ L ++NLD VS+ + +FS+FG + + + D G S G A + FE A +AM
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLH 76
Query: 571 YNG 579
+G
Sbjct: 77 MDG 79
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 35.9 bits (79), Expect = 0.021
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKAMKQ 570
+ V L + + I+ F+EFG + + + DR +GRS G V F+ A+ +
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDR 104
Query: 571 YNGVPLDG 594
NG LDG
Sbjct: 105 MNGQELDG 112
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 35.9 bits (79), Expect = 0.021
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +1
Query: 385 GPS-KLLVSNLDFGVSDSDIQELFSE-FGILKSAAVHYD-RSGRSLGTADVVFERRADAL 555
GP + V +L VSD+ + E FSE + +K+A V D +GRS G V F +
Sbjct: 194 GPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERT 253
Query: 556 KAMKQYNGV 582
KAM + NGV
Sbjct: 254 KAMTEMNGV 262
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 35.9 bits (79), Expect = 0.021
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +1
Query: 385 GPS-KLLVSNLDFGVSDSDIQELFSE-FGILKSAAVHYD-RSGRSLGTADVVFERRADAL 555
GP + V +L VSD+ + E FSE + +K+A V D +GRS G V F +
Sbjct: 194 GPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERT 253
Query: 556 KAMKQYNGV 582
KAM + NGV
Sbjct: 254 KAMTEMNGV 262
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1
Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQYN 576
+ V LD V+D D+++ F+EFG + S + + G V F R +A +A+++ N
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK-----GCGFVQFVNRPNAEEALEKLN 360
Query: 577 G 579
G
Sbjct: 361 G 361
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 35.9 bits (79), Expect = 0.021
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 370 GAITTGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRA 546
G ++ PSK+ V L ++E F FG + A V DR SG S G V ++
Sbjct: 29 GNLSLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIE 88
Query: 547 DALKAMKQYNGVPLDG 594
A AM+ LDG
Sbjct: 89 VANNAMQAMQNKELDG 104
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 35.1 bits (77), Expect = 0.036
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +1
Query: 385 GPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKA 561
GP ++ V L + ++S ++EL FG LK + DR +G S G A V++ + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 562 MKQYNGVPL 588
NG+ +
Sbjct: 417 CAALNGIKM 425
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 35.1 bits (77), Expect = 0.036
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +1
Query: 385 GPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKA 561
GP ++ V L + ++S ++EL FG LK + DR +G S G A V++ + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 562 MKQYNGVPL 588
NG+ +
Sbjct: 417 CAALNGIKM 425
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 35.1 bits (77), Expect = 0.036
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +1
Query: 385 GPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKA 561
GP ++ V L + ++S ++EL FG LK + DR +G S G A V++ + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 562 MKQYNGVPL 588
NG+ +
Sbjct: 417 CAALNGIKM 425
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 35.1 bits (77), Expect = 0.036
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +1
Query: 385 GPS-KLLVSNLDFGVSDSDIQELFSE-FGILKSAAVHYD-RSGRSLGTADVVFERRADAL 555
GP + V +L VSD+ + E FSE + +K+A V D +GRS G V F +
Sbjct: 196 GPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERT 255
Query: 556 KAMKQYNGV 582
KAM + NGV
Sbjct: 256 KAMTEMNGV 264
Score = 34.7 bits (76), Expect = 0.047
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +1
Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQYN 576
+ V LD V+D D+++ FSEFG + S + + G V F R +A +A+++ N
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK-----GCGFVQFVNRPNAEEALEKLN 362
Query: 577 G 579
G
Sbjct: 363 G 363
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 34.3 bits (75), Expect = 0.063
Identities = 20/63 (31%), Positives = 37/63 (58%)
Frame = +1
Query: 391 SKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570
S++ V NLD V++ ++++ F FG+++S V + R G A + FE DA A+++
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWV----ARRPPGYAFLDFEDSRDARDAIRE 57
Query: 571 YNG 579
+G
Sbjct: 58 VDG 60
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 34.3 bits (75), Expect = 0.063
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +1
Query: 397 LLVSNLDFGVSDSDIQELF-SEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKAMKQ 570
+ V +L V+D + E F + + +K A V DR +GR+ G V F ++ ++AM +
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 571 YNGVP 585
NGVP
Sbjct: 217 MNGVP 221
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 34.3 bits (75), Expect = 0.063
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +1
Query: 397 LLVSNLDFGVSDSDIQELF-SEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKAMKQ 570
+ V +L V+D + E F + + +K A V DR +GR+ G V F ++ ++AM +
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 571 YNGVP 585
NGVP
Sbjct: 217 MNGVP 221
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQY 573
KL V +L+ ++ +++E+F +FG ++ + D +S G V + + A+ A+
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGL 271
Query: 574 NG 579
NG
Sbjct: 272 NG 273
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQY 573
KL V +L+ ++ +++E+F +FG ++ + D +S G V + + A+ A+
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGL 271
Query: 574 NG 579
NG
Sbjct: 272 NG 273
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKAMKQ 570
K+ V L + + E F ++G ++ +D+ SG+S G ++++ R+ A A+KQ
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKAMKQ 570
K+ V L + + E F ++G ++ +D+ SG+S G ++++ R+ A A+KQ
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKAMKQ 570
K+ V L + + E F ++G ++ +D+ SG+S G ++++ R+ A A+KQ
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 33.1 bits (72), Expect = 0.14
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 388 PSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYD-RSGRSLGTADVVFERRADALKAM 564
P+ LLV NL D++ F +FG +K + D +G G + F ADA +A
Sbjct: 36 PTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAK 95
Query: 565 KQYNGVPLDG 594
Q +G L G
Sbjct: 96 HQMDGYLLLG 105
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKAMKQ 570
K+ VSN+ + + E FS FG ++ + D+ +GR G A V+ A KA+++
Sbjct: 228 KIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEE 287
>At2g34315.1 68415.m04200 disease resistance protein-related similar
to SP|P54120 AIG1 protein {Arabidopsis thaliana}
Length = 246
Score = 32.7 bits (71), Expect = 0.19
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -2
Query: 223 IHHHVLVFCLYQIFCQHHRCLFYSL 149
++HH+L+FC++ FC + C+F +L
Sbjct: 221 LNHHLLLFCVFYCFCFFYFCIFPTL 245
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 32.3 bits (70), Expect = 0.25
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 397 LLVSNLDFGVSDSDIQELFSEFG-ILKSAAVHYDRSGRSLGTADVVFERRADALKAM 564
+ V+N+ FG + + F++FG +LK+ V +G+ G+A + F R+ A A+
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENAL 574
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQY 573
KL V L+ + ++ E+FS +GI++ + D G A V F + AL A+K
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKAL 267
Query: 574 NGV 582
NG+
Sbjct: 268 NGL 270
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFG-ILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570
+ V L + D ++ F+++G ++ S ++ +GRS G V F+ A++
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 571 YNGVPLDG 594
NG LDG
Sbjct: 69 MNGQDLDG 76
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFG-ILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570
+ V L + D ++ F+++G ++ S ++ +GRS G V F+ A++
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 571 YNGVPLDG 594
NG LDG
Sbjct: 69 MNGQDLDG 76
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 385 GPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKA 561
GP ++ V L + ++ I+EL FG L+ + DR +G S G A V++ + A
Sbjct: 373 GPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432
Query: 562 MKQYNGVPL 588
NG+ +
Sbjct: 433 CAALNGIKM 441
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 32.3 bits (70), Expect = 0.25
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = +1
Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQYN 576
LLV +L G+ + LFS++G ++AV G+ A V F+ A A +A +Q N
Sbjct: 30 LLVRHLPDGIPHDIVSRLFSQYG---ASAVRPCSGGKLRNAAFVDFKNEAFASQAHRQLN 86
Query: 577 GV 582
G+
Sbjct: 87 GL 88
>At5g11470.1 68418.m01339 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 691
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 158 KKAAVVLAENLIQTEDQDVVVDFVIAAQVEYCEAEIV 268
KK VVL +NL T D V D V +A + CEA ++
Sbjct: 529 KKGTVVLLQNLDPTYTSDEVEDIVYSALNQQCEARMI 565
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 31.9 bits (69), Expect = 0.33
Identities = 20/63 (31%), Positives = 36/63 (57%)
Frame = +1
Query: 391 SKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570
S++ V NLD V++ ++++ F FG+++S V + R G A + FE DA A++
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWV----ARRPPGYAFLDFEDPRDARDAIRA 57
Query: 571 YNG 579
+G
Sbjct: 58 LDG 60
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 31.5 bits (68), Expect = 0.44
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVF 534
KL + + + + +QE F ++G L A + DR +GR+ G +VF
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVF 63
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYD-RSGRSLGTADVVFE 537
K+ V L +++++ + F +FG + V YD + R G + F+
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFD 171
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 31.5 bits (68), Expect = 0.44
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 388 PSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYD-RSGRSLGTADVVFERRADALKAM 564
P+ LLV NL D+++ F +FG +K + D +G G V F ADA A
Sbjct: 35 PTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAK 94
Query: 565 KQYNGVPLDG 594
+G L G
Sbjct: 95 HHMDGYLLLG 104
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 31.5 bits (68), Expect = 0.44
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYD-RSGRSLGTADVVFERRADALKAMKQY 573
L V L+ D D+ +FS FG + SA V D ++G SL A + FE + +A +
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 574 NGVPLD 591
+ +D
Sbjct: 305 DNALID 310
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 31.1 bits (67), Expect = 0.58
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVF 534
KL + + + ++ ++E FS FG + A + DR +GR+ G VVF
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF 54
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRS 501
K+ V L V++SD + F +FG V YD +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 31.1 bits (67), Expect = 0.58
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVF 534
KL + + + ++ ++E FS FG + A + DR +GR+ G VVF
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF 54
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRS 501
K+ V L V++SD + F +FG V YD +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 31.1 bits (67), Expect = 0.58
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 403 VSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKAM 564
V LD + D+ ++FS+FG + + + YDR +G+S V FE A+
Sbjct: 11 VRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAI 65
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 30.7 bits (66), Expect = 0.77
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +1
Query: 403 VSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570
V N D+ SD++ LFS+FG +K R G A V FE DA A+++
Sbjct: 6 VGNFDYDTRHSDLERLFSKFGRVK-------RVDMKSGYAFVYFEDERDAEDAIRR 54
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 30.7 bits (66), Expect = 0.77
Identities = 18/58 (31%), Positives = 34/58 (58%)
Frame = +1
Query: 391 SKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAM 564
+++ V NLD V++ ++++ F FG+L++ V + R G A + F+ DAL A+
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWV----ARRPPGYAFLEFDDERDALDAI 55
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 30.7 bits (66), Expect = 0.77
Identities = 18/58 (31%), Positives = 34/58 (58%)
Frame = +1
Query: 391 SKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAM 564
+++ V NLD V++ ++++ F FG+L++ V + R G A + F+ DAL A+
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWV----ARRPPGYAFLEFDDERDALDAI 55
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +1
Query: 385 GPS---KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYD-RSGRSLGTADVVFERRADA 552
GPS K+ V L V++++ ++ F++FG++ V YD R+ R G + ++
Sbjct: 28 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 87
Query: 553 LKAMKQ 570
K +++
Sbjct: 88 DKVLQK 93
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +1
Query: 385 GPS---KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYD-RSGRSLGTADVVFERRADA 552
GPS K+ V L V++++ ++ F++FG++ V YD R+ R G + ++
Sbjct: 101 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 160
Query: 553 LKAMKQ 570
K +++
Sbjct: 161 DKVLQK 166
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVF 534
KL + + + S+ +++ F FG + A + DR +GR+ G VVF
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF 54
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +1
Query: 385 GPS---KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYD-RSGRSLGTADVVFERRADA 552
GPS K+ V L V++++ ++ F++FG++ V YD R+ R G + ++
Sbjct: 101 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 160
Query: 553 LKAMKQ 570
K +++
Sbjct: 161 DKVLQK 166
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVF 534
KL + + + S+ +++ F FG + A + DR +GR+ G VVF
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF 54
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 30.3 bits (65), Expect = 1.0
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +1
Query: 376 ITTGPS-KLLVSNLDFGVSDSDIQELFS-EFGILKSAAVHYDRS-GRSLGTADVVFERRA 546
+ GP + V +L V+D +QE F + ++ A V D S GRS G V F +
Sbjct: 110 VDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEES 169
Query: 547 DALKAMKQYNGV 582
+ +AM + NG+
Sbjct: 170 ERNRAMAEMNGL 181
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +1
Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKAMKQY 573
L + +L + ++ I +F++ G SA V ++ +G+S G + F + A + ++ Y
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTY 121
Query: 574 NGVPL 588
NG P+
Sbjct: 122 NGAPM 126
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 29.1 bits (62), Expect = 2.4
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +1
Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAM--KQ 570
LLV NL F ++ ++ ++F +FG L + ++ +L E RA ALK M K+
Sbjct: 457 LLVKNLPFASTEKELAQMFGKFGSLDKIILPPTKT-MALAVFLEPAEARA-ALKGMAYKR 514
Query: 571 YNGVPL 588
Y PL
Sbjct: 515 YKDAPL 520
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYD-RSGRSLGTADVVFERRADALKAMKQY 573
LLV N+ +++E F FG ++ + D SG+ G A V F DA +A +
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108
Query: 574 N 576
N
Sbjct: 109 N 109
>At1g05020.1 68414.m00503 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related Similar to clathrin assembly protein
gb|X68878 (AP180) from Rattus norvegicus; contains Pfam
PF01417: ENTH domain. ENTH (Epsin N-terminal homology)
domain; EST gb|W43552 comes from this gene
Length = 653
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 406 SNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTA 522
S+LDFG S D E +S++G +S ++ S GT+
Sbjct: 359 SSLDFGDSTIDTSERYSDYGSFRSTSLEDLMSRTEAGTS 397
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERRADALKAMKQ 570
K+ V NL + ++ FS+FG + S V +DR +GR+ A + F + A
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSF-TSGEERDAALS 271
Query: 571 YNGVPLDG 594
+NG +G
Sbjct: 272 FNGTQYEG 279
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Frame = +1
Query: 328 DMFNDFGERKVPRSGAITTG-------PSK-LLVSNLDFGVSDSDIQELFSEFGILKS 477
D+F+ R R G + G PS+ LLV N+ V D +++ LF +FG +++
Sbjct: 188 DIFSSVSHRNGERGGNNSVGELNRGEIPSRTLLVGNISSNVEDYELKVLFEQFGDIQA 245
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 382 TGPSKLLVSNLDFGVSDSDIQELFSEFGILK 474
T LLV+NLD +S+ ++ L +G +K
Sbjct: 299 TSKGALLVNNLDSSISNQELNRLVKSYGEVK 329
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 27.9 bits (59), Expect = 5.4
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Frame = +1
Query: 337 NDFGERKVPRSGAITTGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLG 516
+D+G SG + V NL +S S+I+E F FG +K V +G
Sbjct: 239 SDYGAEAEDGSGFEDFEFKSVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMG 298
Query: 517 T--ADVVFERRADALKAMK 567
A V FE A+K
Sbjct: 299 VCYAFVEFEDMTSVENAIK 317
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 27.9 bits (59), Expect = 5.4
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Frame = +1
Query: 337 NDFGERKVPRSGAITTGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLG 516
+D+G SG + V NL +S S+I+E F FG +K V +G
Sbjct: 298 SDYGAEAEDGSGFEDFEFKSVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMG 357
Query: 517 T--ADVVFERRADALKAMK 567
A V FE A+K
Sbjct: 358 VCYAFVEFEDMTSVENAIK 376
>At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to
DEIH-box RNA/DNA helicase GB:BAA84364 GI:5881579
[Arabidopsis thaliana]
Length = 1576
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 292 YTRGDVNSTWKHDMF 336
YT G+VNS WK D F
Sbjct: 166 YTTGNVNSNWKDDFF 180
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 27.5 bits (58), Expect = 7.2
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = +1
Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQYN 576
L V N+D + D ++ LF +FG ++ A+H +G++ G V + A KA + +
Sbjct: 213 LFVRNVDSSIEDCELGVLFKQFGDVR--ALH--TAGKNRGFIMVSYYDIRAAQKAARALH 268
Query: 577 GVPLDG 594
G L G
Sbjct: 269 GRLLRG 274
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1
Query: 397 LLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQYN 576
+ V +D V D D+++ FS+FG + S + + G V F R A A++ N
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK-----GCGFVQFADRKSAEDAIESLN 377
Query: 577 G 579
G
Sbjct: 378 G 378
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 391 SKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDRSGRSLGTADVVFERRADALKAMKQ 570
+ L V +L ++SD+ ELF +G + V+ R G A + + +A+ A +
Sbjct: 18 NNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSR-----GFAFIYYRHVEEAVAAKEA 72
Query: 571 YNGVPLDG 594
G L+G
Sbjct: 73 LQGANLNG 80
>At1g22170.1 68414.m02771 phosphoglycerate/bisphosphoglycerate
mutase family protein similar to SP|P31217
Phosphoglycerate mutase 1 (EC 5.4.2.1) {Escherichia coli
O157:H7}; contains Pfam profile PF00300:
phosphoglycerate mutase family
Length = 334
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = +2
Query: 278 PRLRITQGVMLTAHGNMTCSMILVKGRF--QEVV---LSQQVPQSY*F 406
P+L + VM+ AHGN S+I+ + QEV+ LS +P Y F
Sbjct: 245 PKLAAGKNVMIAAHGNSLRSIIMYLDKLTCQEVISLELSTGIPLLYIF 292
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYD-RSGRSLGTADVVFE 537
K+ V L +++ + + F +FG + V YD + R G + F+
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFD 159
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYD-RSGRSLGTADVVFE 537
K+ V L +++ + + F +FG + V YD + R G + F+
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFD 159
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 394 KLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYD-RSGRSLGTADVVFE 537
K+ V L +++ + + F +FG + V YD + R G + F+
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFD 159
>At1g75450.1 68414.m08764 FAD-binding domain-containing protein /
cytokinin oxidase family protein similar to GB:CAA77151
from [Zea mays] [SP|Q9T0N8] (Plant J. 17 (6), 615-626
(1999))
Length = 540
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Frame = +1
Query: 376 ITTGPSKLL-VSNLD----FGVSDSDIQELFSEFGILKS 477
+ GPS+LL + +D F V SD+ + S+FG+LKS
Sbjct: 25 LNVGPSELLRIGAIDVDGHFTVHPSDLASVSSDFGMLKS 63
>At1g71680.1 68414.m08271 lysine and histidine specific transporter,
putative similar to lysine and histidine specific
transporter GB: AAC49885 GI:2576361 from (Arabidopsis
thaliana); contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 434
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 478 HS*EFQIQRTIPECPSQTHQSPSWK 404
HS +IQ TIP P + P WK
Sbjct: 246 HSVVLEIQATIPSTPEVPSKKPMWK 270
>At1g48640.1 68414.m05444 lysine and histidine specific transporter,
putative similar to lysine and histidine specific
transporter GI:2576361 from [Arabidopsis thaliana];
contains Pfam profile PF01490: Transmembrane amino acid
transporter protein
Length = 453
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 478 HS*EFQIQRTIPECPSQTHQSPSWK 404
H+ +IQ TIP PS + P W+
Sbjct: 249 HNVVLEIQATIPSTPSNPSKGPMWR 273
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +1
Query: 367 SGAITTGPSKLLVSNLDFGVSDSDIQELFSEFGILKSAAVHYDR-SGRSLGTADVVFERR 543
S + + P KL V + + + F +FG + + + DR +G G V F
Sbjct: 58 SSSSMSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADS 117
Query: 544 ADALKAMKQ 570
A A K +++
Sbjct: 118 AVAEKVLEE 126
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,021,652
Number of Sequences: 28952
Number of extensions: 236136
Number of successful extensions: 701
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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