Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L06
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    91   1e-19
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    27   1.5  
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    27   2.6  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   3.5  
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    26   3.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.1  
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    25   6.1  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    25   6.1  
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha...    25   8.1  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.1  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 71/198 (35%), Positives = 92/198 (46%), Gaps = 5/198 (2%)
 Frame = +3

Query: 3   NGGTRTVLL--KSRKSFYPTQDKIRGRSHGKSFSKHVRRT--RPNLTPGTVCILLAGRHA 170
           NGG R VL   ++   +YP   +    +  K   K VR T  R +L PGTVCILLAGR  
Sbjct: 11  NGGERMVLPAGEAAAKYYPAYRE----NVPKKARKAVRPTKLRASLAPGTVCILLAGRFR 66

Query: 171 GKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTST-KVDLGDFKLPAHLDDAYF 347
           GKR              TGP+  N  P+RR+  RYVI TS  K+D+    +      AYF
Sbjct: 67  GKR-VVVLSQLEDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSV-EKFTKAYF 124

Query: 348 XXXXXXXXXXXXXXQAEDIFATKKEKYVPSEQRMADQKLVDEAVIKAIRLRPEQKTLRGY 527
                         + E  FA    K     +R+ADQK VD  ++ AI+  P  K    Y
Sbjct: 125 ----AKQKRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPNMKE---Y 177

Query: 528 LRASFGLRSSQFPHRLRF 581
           L ASF L +   PH ++F
Sbjct: 178 LAASFALSNGDRPHLMKF 195


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
 Frame = +3

Query: 15  RTVLLKSRKSFYPTQDKIRGR----SHGKSFSKHVRRTRPNLTP 134
           RT+L +  K FYP      GR     H    SK  R+ R   TP
Sbjct: 102 RTILPEDYKKFYPNAKTHMGRPQKIPHTVGLSKSTRKERKQFTP 145


>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 18/69 (26%), Positives = 36/69 (52%)
 Frame = -2

Query: 581 EAQTVRELTRSEPERGPEVTAECLLLGPESDRLYHGLVDQLLVSHTLL*WNVFLLLGSKD 402
           E + + EL R  PER P+   + +++    DR+Y  L   L     ++ + + +L  ++D
Sbjct: 140 ETKRLFELARYLPERYPKADKKDIIIKNPGDRVYTILCPDLESQEHIIQYQLPILF-NRD 198

Query: 401 VLCLLPLDA 375
            + L+ LD+
Sbjct: 199 KIGLVILDS 207


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 184 CSLECCRVVCYSSLDLL 234
           CSLE   +VCYSSL +L
Sbjct: 764 CSLEVGPIVCYSSLKVL 780


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 420 EKYVPSEQRMADQKLVDEAVIKAIRLRPEQKTLRGYLRASFGLRSSQ 560
           + Y P+  R+A + L    +I+ I+LR EQ+  RG+   SF     Q
Sbjct: 226 DAYNPTRARIAVRSL-PPYIIRRIKLRGEQRRGRGFGFVSFANAEDQ 271


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 42  SFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 179
           +FY      R  SH  S S     ++P LT  +  +L +  H  +R
Sbjct: 422 AFYHNSTSSRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHTYER 467


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 503 RAEDTPRLPQGLVRAPIESVPAPS 574
           RA D   L QGL R P ES+P P+
Sbjct: 207 RAADMSEL-QGLTRKPKESIPHPT 229


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 514 VFCSGRSLIAFITASSTSF-WSAIRCSDG 431
           V CS  +L A IT +   F W   RCSDG
Sbjct: 179 VICSD-NLTAAITDNGCCFTWGTFRCSDG 206


>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 238 KAKGPVKSSRPLGNTPTSTTR 176
           KAK P+KSS+   N P S  R
Sbjct: 3   KAKSPIKSSKKSVNQPKSVLR 23


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 509 LLGPESDRLYHGLVDQLLVSHTLL*WNVFLLLGSKDVLCL 390
           +L   S   YH L+  L V +T    N+   LG+KD++C+
Sbjct: 420 MLQAASQLHYHDLI--LYVINTYYSGNIMKNLGNKDLICI 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,242
Number of Sequences: 5004
Number of extensions: 42441
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)