Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_L06
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...   101   4e-22
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    96   2e-20
03_05_0412 + 23993452-23994068,23996249-23996350,23996799-239969...    30   1.5  
07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331     29   2.7  
04_01_0418 - 5531652-5531827,5535111-5535195,5535250-5535402,553...    28   4.7  
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251     27   8.2  

>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score =  101 bits (242), Expect = 4e-22
 Identities = 70/181 (38%), Positives = 90/181 (49%), Gaps = 4/181 (2%)
 Frame = +3

Query: 51  PTQDKIRGRSHGKSFS--KHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFT 224
           PT+ +    S+   FS  + +   R ++TPGTV ILLAGR  GKR              T
Sbjct: 71  PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130

Query: 225 GPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQAEDI 404
           GPF  N  P+RR+ Q YVI TSTKVD+    +    DD YF                 ++
Sbjct: 131 GPFKINGVPIRRVNQPYVIATSTKVDISGVNV-EKFDDKYFSRDKKQKAKKTEG----EL 185

Query: 405 FATKKE--KYVPSEQRMADQKLVDEAVIKAIRLRPEQKTLRGYLRASFGLRSSQFPHRLR 578
           F T+KE  K +P E +  DQK+VD  +IKAI   P+ KT   YL A F LR    PH + 
Sbjct: 186 FETEKEATKNLP-EFKKEDQKVVDAELIKAIEAVPDLKT---YLGARFSLRDGDKPHEMV 241

Query: 579 F 581
           F
Sbjct: 242 F 242


>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 70/177 (39%), Positives = 91/177 (51%), Gaps = 3/177 (1%)
 Frame = +3

Query: 45  FYPTQD-KIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXF 221
           FYP  D K R  S  K+    +R T   +TPGTV ILLAGR+ GKR              
Sbjct: 50  FYPADDVKPRAPSTRKANPTKLRST---ITPGTVLILLAGRYMGKRVVFLKQLKSGLLLI 106

Query: 222 TGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQAED 401
           TGPF  N  P+RR+ Q YVI TSTKVD+   K+    DD YF                 +
Sbjct: 107 TGPFKINGVPIRRVNQAYVIATSTKVDISGVKVD-KFDDKYFARDKKAKAKKTEG----E 161

Query: 402 IFATKKE--KYVPSEQRMADQKLVDEAVIKAIRLRPEQKTLRGYLRASFGLRSSQFP 566
           +F T+KE  K +P + +  DQK VD  +IKAI + P+   L+ YL    G R+S++P
Sbjct: 162 LFETEKEATKNLP-DFKKDDQKAVDAELIKAIEVVPD---LKSYL----GARNSRWP 210


>03_05_0412 +
           23993452-23994068,23996249-23996350,23996799-23996994,
           23997075-23997259,23997394-23997498,23997625-23997722,
           23997832-23998067,23998314-23998382,23999768-23999833,
           24000513-24000611,24000688-24000750
          Length = 611

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 271 RCGILRRGHALKAKGPVKSSRPLGNTPTSTT 179
           RCG+ ++GH   A GP  +  P  ++  +TT
Sbjct: 23  RCGLPKKGHVCAAGGPAPTPSPSSSSGAATT 53


>07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331
          Length = 599

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 226 PVKSSRPLGNTPTSTTRLPACLPANRMHTVPGVRLGLVLRTCLL 95
           P  ++ P+ +TP+ T +   CLPA+R  T    R   +LR  L+
Sbjct: 258 PTWTTSPILSTPSHTWQRSLCLPASRSFTPRKSRRDQLLRLALV 301


>04_01_0418 -
           5531652-5531827,5535111-5535195,5535250-5535402,
           5535516-5535632,5536136-5536363
          Length = 252

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 563 ELTRSEPERGPEVTAECLLLGPESDRLYHGLVDQLL 456
           E+  ++P R PE +  C  +  E D +Y G   Q+L
Sbjct: 107 EIVLTDPRRDPEQSIICRKVKGEKDEVYRGASTQIL 142


>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
          Length = 1821

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -3

Query: 226 PVKSSRPLGNTPTSTTRLPACLPANRMHTVPGVRLG 119
           P+KS+ P GN    TTRL +   A R+ TV  + LG
Sbjct: 440 PLKSNHPKGNMILVTTRLLSL--AQRIGTVKPIELG 473


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,224,165
Number of Sequences: 37544
Number of extensions: 330252
Number of successful extensions: 982
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)