Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_L06
(582 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0) 94 9e-20
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 32 0.39
SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013) 29 2.8
SB_48176| Best HMM Match : Prokineticin (HMM E-Value=7.3) 29 3.7
SB_59148| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_8849| Best HMM Match : F-box (HMM E-Value=0.86) 28 4.8
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_58499| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_31507| Best HMM Match : SRCR (HMM E-Value=5.2) 28 6.4
SB_19608| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_2648| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
Length = 112
Score = 93.9 bits (223), Expect = 9e-20
Identities = 53/120 (44%), Positives = 67/120 (55%), Gaps = 2/120 (1%)
Frame = +3
Query: 228 PFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAH--LDDAYFXXXXXXXXXXXXXXQAED 401
PF N PLRRIPQ YVI TST +D+ D KLP H D++YF ++ED
Sbjct: 2 PFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESYF------KGEPKKKKRSED 55
Query: 402 IFATKKEKYVPSEQRMADQKLVDEAVIKAIRLRPEQKTLRGYLRASFGLRSSQFPHRLRF 581
+F E+ PSEQR+ADQK VD+ ++ I P K YL + F LR QFPH + F
Sbjct: 56 MFEEAAEEKKPSEQRIADQKAVDDQILPKISAVPNMKK---YLSSLFSLRKGQFPHDMVF 112
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 169 LASVSCSLECC--RVVCYSSLDLLLSTRVPCAGFR 267
+A SC + CC RVVCYS + S RV C R
Sbjct: 162 VACCSCRVACCSCRVVCYSCRVVCYSCRVACCSCR 196
Score = 31.5 bits (68), Expect = 0.52
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +1
Query: 181 SCSLECC--RVVCYSSLDLLLSTRVPCAGFR 267
SC + CC RVVCYS + S RV C R
Sbjct: 124 SCRIACCSCRVVCYSCRVVFCSCRVACCSCR 154
Score = 31.1 bits (67), Expect = 0.69
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +1
Query: 181 SCSLECC--RVVCYSSLDLLLSTRVPCAGFR 267
SC + CC RVVCYS + S RV C R
Sbjct: 187 SCRVACCSCRVVCYSCRVVFCSCRVACCSCR 217
Score = 30.7 bits (66), Expect = 0.91
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 142 CAFCWRADTLASVSCSLEC--CRVVCYSSLDLLLSTRVPCAGFRSA 273
C + + +A SC + C CRVVCYS S RV C R A
Sbjct: 202 CRVVFCSCRVACCSCRVVCYSCRVVCYSCRVACCSCRVVCYSCRVA 247
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +1
Query: 181 SCSLECC--RVVCYSSLDLLLSTRVPCAGFR 267
SC + CC RVVCYS S RV C R
Sbjct: 145 SCRVACCSCRVVCYSCRVACCSCRVACCSCR 175
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 169 LASVSCSLEC--CRVVCYSSLDLLLSTRVPCAGFR 267
+A SC + C CRVVCYS S RV C R
Sbjct: 169 VACCSCRVVCYSCRVVCYSCRVACCSCRVVCYSCR 203
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +1
Query: 181 SCSLECC--RVVCYSSLDLLLSTRVPCAGFRSA 273
SC + CC RVVCYS S RV C R A
Sbjct: 229 SCRVACCSCRVVCYSCRVACCSCRVVCYSCRVA 261
>SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013)
Length = 340
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 238 KAKGPVKSSRPLGNTPTSTTRLPACLPANRMHTVP 134
K+ P KS++P + PT+ T LP P R+ ++P
Sbjct: 202 KSTKPTKSTKPTESKPTAPTSLPDQRPNCRLPSMP 236
>SB_48176| Best HMM Match : Prokineticin (HMM E-Value=7.3)
Length = 146
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -3
Query: 508 CSGRSLIAFITASSTSFWSAI 446
C+ +SLIA ITA TS WS I
Sbjct: 59 CATQSLIARITAGETSVWSLI 79
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 508 CSGRSLIAFITASSTSFWSAIRCSDGTYFSFLVAKMSSAC 389
C+ +SLIA ITA TS W A G F + + +S C
Sbjct: 11 CATQSLIARITAGETSVWPA-----GRVFGYALCHPASNC 45
>SB_59148| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 127 SLPAQCAFCWRADTLASVSCSLECCRVVC 213
S+ QC W A S+S +++ C+ VC
Sbjct: 127 SVEKQCVVRWLASVRTSISTAVDVCKAVC 155
>SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)
Length = 1222
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 158 GQTRWQ-ACRARWSVAEWSATLHWTFCFQRVSPAQDSAALC 277
G+ RW+ A + W + W + + C QRV D ALC
Sbjct: 178 GEMRWKLALKRNWLYSNWKCVVCYRNCSQRVDSHFD-VALC 217
>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3889
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 238 KAKGPVKSSRPLGNTPTSTTRLPACLPANRMHTVPG 131
+ K PV +SR L N PT T + + H +PG
Sbjct: 1009 RIKTPVPTSRLLLNVPTQNTAKSIIIQTYKKHALPG 1044
>SB_58499| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 508 CSGRSLIAFITASSTSFWSAI 446
C+ +SLIA ITA TS WS +
Sbjct: 83 CATQSLIARITAGGTSVWSLV 103
>SB_31507| Best HMM Match : SRCR (HMM E-Value=5.2)
Length = 193
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 508 CSGRSLIAFITASSTSFWSAIRCSDGTYFSFLVAKMSSAC 389
C+ +SLIA ITA TS W A G F + + S C
Sbjct: 52 CTTQSLIARITAGGTSVWPA-----GRVFGYALCHQVSNC 86
>SB_19608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 389 LPLDAAFHALLVLLKVGIVKMRR*LEIAQVYLSR 288
+P A H+L + LK+GI K+ EI + YL +
Sbjct: 150 IPFSTAIHSLELHLKLGITKVNTLNEIIKDYLEK 183
>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 73 VVLMARVSVNMCVGRDLTSL-PAQCAFCWRADTLASVSCSLECCRVVCYSSLDLLLSTRV 249
V+ +RV + +C R L P++ + SVSC C V+C S + ++L
Sbjct: 83 VLCPSRVCIVLCPSRVCIVLCPSRVCIVLCPSRVVSVSCPYRVCIVLCPSCVCIVLCPSC 142
Query: 250 PC 255
C
Sbjct: 143 VC 144
>SB_2648| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 389 LPLDAAFHALLVLLKVGIVKMRR*LEIAQVYLSR 288
+P A H+L + LK+GI K+ EI + YL +
Sbjct: 23 IPFSTAIHSLELHLKLGITKVNTLNEIIKDYLEK 56
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,288,610
Number of Sequences: 59808
Number of extensions: 380177
Number of successful extensions: 1040
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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